Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPF16_RS06575 Genome accession   NC_017368
Coordinates   1342186..1343322 (-) Length   378 a.a.
NCBI ID   WP_001045778.1    Uniprot ID   -
Organism   Helicobacter pylori F16     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1337186..1348322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF16_RS06555 (HPF16_1276) hypE 1337371..1338369 (+) 999 WP_000377386.1 hydrogenase expression/formation protein HypE -
  HPF16_RS06560 (HPF16_1277) - 1338619..1339551 (-) 933 WP_001002521.1 GDP-L-fucose synthase family protein -
  HPF16_RS06565 (HPF16_1278) gmd 1339544..1340689 (-) 1146 WP_000659852.1 GDP-mannose 4,6-dehydratase -
  HPF16_RS06570 (HPF16_1279) - 1340713..1342116 (-) 1404 WP_000694849.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPF16_RS06575 (HPF16_1280) comB10 1342186..1343322 (-) 1137 WP_001045778.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPF16_RS06580 (HPF16_1281) comB9 1343315..1344277 (-) 963 WP_014535885.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPF16_RS06585 (HPF16_1282) comB8 1344277..1345020 (-) 744 WP_000660524.1 type IV secretion system protein Machinery gene
  HPF16_RS06590 comB7 1345017..1345142 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  HPF16_RS06595 (HPF16_1283) comB6 1345158..1346213 (-) 1056 WP_000786708.1 P-type conjugative transfer protein TrbL Machinery gene
  HPF16_RS06600 (HPF16_1284) - 1346219..1347214 (-) 996 WP_000468437.1 PDZ domain-containing protein -
  HPF16_RS06605 (HPF16_1285) - 1347214..1347507 (-) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  HPF16_RS06610 (HPF16_1286) panD 1347518..1347868 (-) 351 WP_000142207.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42131.76 Da        Isoelectric Point: 9.9227

>NTDB_id=46918 HPF16_RS06575 WP_001045778.1 1342186..1343322(-) (comB10) [Helicobacter pylori F16]
MNKWIKGVLVFVGGFATITTISLIYHQKPKVPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAILIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVVAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=46918 HPF16_RS06575 WP_001045778.1 1342186..1343322(-) (comB10) [Helicobacter pylori F16]
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGTCCCATTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCATCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGGGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTTCCTATACCCAAAGAGAATGAAGTCGTCG
CCGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

95.767

100

0.958

Multiple sequence alignment