Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HU024_RS05135 Genome accession   NZ_CP059344
Coordinates   973692..974027 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain K01     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 968692..979027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU024_RS05085 (HU024_05085) comGC 968924..969190 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  HU024_RS05090 (HU024_05090) comGD 969180..969617 (+) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  HU024_RS05095 (HU024_05095) comGE 969601..969915 (+) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  HU024_RS05100 (HU024_05100) comGF 969860..970324 (+) 465 WP_223813077.1 competence type IV pilus minor pilin ComGF -
  HU024_RS05105 (HU024_05105) comGG 970325..970702 (+) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  HU024_RS05110 (HU024_05110) - 970759..970938 (+) 180 WP_022552966.1 YqzE family protein -
  HU024_RS05115 (HU024_05115) - 970979..971308 (-) 330 WP_032874021.1 DUF3889 domain-containing protein -
  HU024_RS05120 (HU024_05120) tapA 971567..972238 (+) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  HU024_RS05125 (HU024_05125) sipW 972210..972794 (+) 585 WP_032874025.1 signal peptidase I SipW -
  HU024_RS05130 (HU024_05130) tasA 972859..973644 (+) 786 WP_032874027.1 biofilm matrix protein TasA -
  HU024_RS05135 (HU024_05135) sinR 973692..974027 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  HU024_RS05140 (HU024_05140) sinI 974061..974234 (-) 174 WP_032874029.1 anti-repressor SinI Regulator
  HU024_RS05145 (HU024_05145) - 974411..975205 (-) 795 WP_007612541.1 YqhG family protein -
  HU024_RS05150 (HU024_05150) - 975227..976897 (-) 1671 WP_032874031.1 DEAD/DEAH box helicase -
  HU024_RS05155 (HU024_05155) gcvT 977320..978420 (+) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=468861 HU024_RS05135 WP_003153104.1 973692..974027(-) (sinR) [Bacillus velezensis strain K01]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=468861 HU024_RS05135 WP_003153104.1 973692..974027(-) (sinR) [Bacillus velezensis strain K01]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991