Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HZT45_RS14515 Genome accession   NZ_CP059318
Coordinates   2995382..2996026 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain BIOMA BV10     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2990382..3001026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT45_RS14480 (HZT45_14480) - 2991567..2991998 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  HZT45_RS14485 (HZT45_14485) - 2991998..2992339 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  HZT45_RS14490 (HZT45_14490) - 2992332..2993813 (+) 1482 WP_041482212.1 Na+/H+ antiporter subunit D -
  HZT45_RS14495 (HZT45_14495) - 2993819..2994295 (+) 477 WP_052827786.1 Na+/H+ antiporter subunit E -
  HZT45_RS14500 (HZT45_14500) - 2994295..2994579 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  HZT45_RS14505 (HZT45_14505) mnhG 2994563..2994937 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  HZT45_RS14510 (HZT45_14510) - 2994977..2995360 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  HZT45_RS14515 (HZT45_14515) comA 2995382..2996026 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  HZT45_RS14520 (HZT45_14520) comP 2996107..2998416 (-) 2310 WP_020954299.1 histidine kinase Regulator
  HZT45_RS14525 (HZT45_14525) - 2998436..2998612 (-) 177 WP_007408675.1 competence pheromone ComX -
  HZT45_RS14530 (HZT45_14530) comQ 2998612..2999496 (-) 885 WP_032865221.1 class 1 isoprenoid biosynthesis enzyme Regulator
  HZT45_RS14535 (HZT45_14535) degQ 2999681..2999821 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  HZT45_RS14540 (HZT45_14540) - 3000286..3000627 (+) 342 WP_012118316.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=468544 HZT45_RS14515 WP_003152052.1 2995382..2996026(-) (comA) [Bacillus velezensis strain BIOMA BV10]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=468544 HZT45_RS14515 WP_003152052.1 2995382..2996026(-) (comA) [Bacillus velezensis strain BIOMA BV10]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAAGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864