Detailed information NTG0468440

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H0529_RS22305
• Genome accession: NZ_CP059300
• Coordinates: 3019982..3020842 (+)
• Length: 286 a.a.
• NCBI ID: WP_031966875.1
• Uniprot ID: A0A505MH08
• Organism: Acinetobacter baumannii strain AC1633
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3014982..3025842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0529_RS14650 (H0529_14650)	secG	3015587..3015916 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
H0529_RS14655 (H0529_14655)	tpiA	3015929..3016723 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
H0529_RS14660 (H0529_14660)	pilB	3017014..3018726 (+)	1713	WP_031966873.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H0529_RS14665 (H0529_14665)	pilC	3018756..3019982 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
H0529_RS22305 (H0529_14670)	pilD	3019982..3020842 (+)	861	WP_031966875.1	A24 family peptidase	Machinery gene
H0529_RS14675 (H0529_14675)	coaE	3020844..3021440 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
H0529_RS14680 (H0529_14680)	-	3021437..3022351 (-)	915	WP_000075020.1	DMT family transporter	-
H0529_RS14685 (H0529_14685)	rlmB	3022387..3023136 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H0529_RS14690 (H0529_14690)	-	3023238..3023564 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
H0529_RS14695 (H0529_14695)	-	3023641..3024951 (-)	1311	WP_000753285.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32060.45 Da
• Isoelectric Point: 7.1041

>NTDB_id=468440 H0529_RS22305 WP_031966875.1 3019982..3020842(+) (pilD) [Acinetobacter baumannii strain AC1633]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=468440 H0529_RS22305 WP_031966875.1 3019982..3020842(+) (pilD) [Acinetobacter baumannii strain AC1633]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

3D structure

• AlphaFold DB: A0A505MH08

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437