Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   H0529_RS18010 Genome accession   NZ_CP059300
Coordinates   3730206..3730688 (+) Length   160 a.a.
NCBI ID   WP_001046423.1    Uniprot ID   A0A9E9MD39
Organism   Acinetobacter baumannii strain AC1633     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3725206..3735688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0529_RS18000 (H0529_17995) pilX 3725509..3726327 (+) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H0529_RS18005 (H0529_18000) pilY1 3726339..3730193 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  H0529_RS18010 (H0529_18005) pilY2 3730206..3730688 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  H0529_RS18015 (H0529_18010) pilE 3730685..3731110 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  H0529_RS18020 (H0529_18015) rpsP 3731257..3731508 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  H0529_RS18025 (H0529_18020) rimM 3731528..3732076 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  H0529_RS18030 (H0529_18025) trmD 3732122..3732862 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H0529_RS18035 (H0529_18030) rplS 3733070..3733438 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  H0529_RS18040 (H0529_18035) - 3733491..3734432 (-) 942 WP_086321537.1 triacylglycerol lipase -
  H0529_RS18045 (H0529_18040) - 3734547..3735578 (-) 1032 WP_001189457.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17575.84 Da        Isoelectric Point: 8.4834

>NTDB_id=468432 H0529_RS18010 WP_001046423.1 3730206..3730688(+) (pilY2) [Acinetobacter baumannii strain AC1633]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAVKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=468432 H0529_RS18010 WP_001046423.1 3730206..3730688(+) (pilY2) [Acinetobacter baumannii strain AC1633]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGTTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419