Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   H0529_RS18000 Genome accession   NZ_CP059300
Coordinates   3725509..3726327 (+) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain AC1633     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3720509..3731327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0529_RS17965 (H0529_17960) - 3721091..3721221 (-) 131 Protein_3528 hypothetical protein -
  H0529_RS17970 (H0529_17965) rpoZ 3721260..3721538 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H0529_RS17975 (H0529_17970) gmk 3721611..3722240 (-) 630 WP_000015937.1 guanylate kinase -
  H0529_RS17980 (H0529_17975) ispH 3722363..3723313 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H0529_RS17985 (H0529_17980) fimU 3723483..3723956 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H0529_RS17990 (H0529_17985) pilV 3723950..3724510 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H0529_RS17995 (H0529_17990) pilW 3724511..3725512 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  H0529_RS18000 (H0529_17995) pilX 3725509..3726327 (+) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H0529_RS18005 (H0529_18000) pilY1 3726339..3730193 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  H0529_RS18010 (H0529_18005) pilY2 3730206..3730688 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  H0529_RS18015 (H0529_18010) pilE 3730685..3731110 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=468430 H0529_RS18000 WP_000149376.1 3725509..3726327(+) (pilX) [Acinetobacter baumannii strain AC1633]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=468430 H0529_RS18000 WP_000149376.1 3725509..3726327(+) (pilX) [Acinetobacter baumannii strain AC1633]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989