Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   H0529_RS17875 Genome accession   NZ_CP059300
Coordinates   3698696..3699436 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain AC1633     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3693696..3704436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0529_RS17860 (H0529_17855) ponA 3694282..3696837 (-) 2556 WP_031965526.1 penicillin-binding protein PBP1a -
  H0529_RS17865 (H0529_17860) pilM 3697000..3698058 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  H0529_RS17870 (H0529_17865) pilN 3698058..3698699 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  H0529_RS17875 (H0529_17870) pilO 3698696..3699436 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0529_RS17880 (H0529_17875) pilP 3699447..3699974 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H0529_RS17885 (H0529_17880) pilQ 3700037..3702202 (+) 2166 WP_001017035.1 type IV pilus secretin PilQ family protein Machinery gene
  H0529_RS17890 (H0529_17885) aroK 3702214..3702783 (+) 570 WP_000643712.1 shikimate kinase AroK -
  H0529_RS17895 (H0529_17890) aroB 3702812..3703894 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=468423 H0529_RS17875 WP_000076101.1 3698696..3699436(+) (pilO) [Acinetobacter baumannii strain AC1633]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=468423 H0529_RS17875 WP_000076101.1 3698696..3699436(+) (pilO) [Acinetobacter baumannii strain AC1633]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683