Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H0529_RS17870 Genome accession   NZ_CP059300
Coordinates   3698058..3698699 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain AC1633     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3693058..3703699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0529_RS17850 (H0529_17845) - 3693105..3693437 (+) 333 WP_031965525.1 hypothetical protein -
  H0529_RS17855 (H0529_17850) - 3693440..3694264 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  H0529_RS17860 (H0529_17855) ponA 3694282..3696837 (-) 2556 WP_031965526.1 penicillin-binding protein PBP1a -
  H0529_RS17865 (H0529_17860) pilM 3697000..3698058 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  H0529_RS17870 (H0529_17865) pilN 3698058..3698699 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  H0529_RS17875 (H0529_17870) pilO 3698696..3699436 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0529_RS17880 (H0529_17875) pilP 3699447..3699974 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H0529_RS17885 (H0529_17880) pilQ 3700037..3702202 (+) 2166 WP_001017035.1 type IV pilus secretin PilQ family protein Machinery gene
  H0529_RS17890 (H0529_17885) aroK 3702214..3702783 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=468422 H0529_RS17870 WP_000201227.1 3698058..3698699(+) (pilN) [Acinetobacter baumannii strain AC1633]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=468422 H0529_RS17870 WP_000201227.1 3698058..3698699(+) (pilN) [Acinetobacter baumannii strain AC1633]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709