Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HZY77_RS17515 Genome accession   NZ_CP059257
Coordinates   3522740..3524056 (-) Length   438 a.a.
NCBI ID   WP_296817566.1    Uniprot ID   A0A7L5YJB1
Organism   MAG: Thiobacillus sp. isolate SSC5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517740..3529056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZY77_RS17485 (HZY77_17330) petA 3518869..3519474 (+) 606 WP_296817560.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  HZY77_RS17490 (HZY77_17335) - 3519479..3520711 (+) 1233 WP_296817562.1 cytochrome b N-terminal domain-containing protein -
  HZY77_RS17495 (HZY77_17340) - 3520713..3521436 (+) 724 Protein_3468 cytochrome c1 -
  HZY77_RS17500 (HZY77_17345) - 3521537..3522136 (+) 600 WP_018506445.1 glutathione S-transferase N-terminal domain-containing protein -
  HZY77_RS17505 (HZY77_17350) - 3522151..3522555 (+) 405 WP_296817564.1 ClpXP protease specificity-enhancing factor -
  HZY77_RS17515 (HZY77_17360) pilR 3522740..3524056 (-) 1317 WP_296817566.1 sigma-54 dependent transcriptional regulator Regulator
  HZY77_RS17520 (HZY77_17365) - 3524059..3525618 (-) 1560 WP_296817568.1 HAMP domain-containing sensor histidine kinase -
  HZY77_RS17525 - 3525636..3525743 (-) 108 WP_296817570.1 PP0621 family protein -
  HZY77_RS17530 - 3525737..3526006 (-) 270 WP_296817572.1 hypothetical protein -
  HZY77_RS17535 (HZY77_17375) - 3526388..3527110 (+) 723 WP_296817574.1 PEP-CTERM sorting domain-containing protein -
  HZY77_RS17540 (HZY77_17380) pepA 3527472..3528230 (+) 759 WP_296817576.1 flocculation-associated PEP-CTERM protein PepA -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 47711.17 Da        Isoelectric Point: 4.8861

>NTDB_id=468190 HZY77_RS17515 WP_296817566.1 3522740..3524056(-) (pilR) [MAG: Thiobacillus sp. isolate SSC5]
MATSPRILLVDDEPDLLDLMELTLVKMGLETDRAVSVAEAQARLRQTHYDLCLTDMRLTDGEGLDVIACASALALPVPVA
VITAYGNAGNAVAALKAGAFDYLAKPVALDQLRTLVKSALTIPESAQADDPSRELIGQSAVMQDIRARIAKLARTQAPVH
IAGESGSGKELAARLIHRLGNRSGKSFVAVNCGAIPETLMESEFXGYRKGAFTGXDTDRDGFFQAANGGTLFLDEVADLP
LSMQVKLLRVLQEXXVRKVGATTEEPIDVRIVSATHQDLSALVETGRFRQDLYYRLNVIDLVMPSLRDRAKDIPEMARFL
LDKLXGADVELDRDAEKALCAYAXPGNVRELENTLERALALCEGQHINAADLNLVPALPAASAAPGSKYPLQDYLDQMER
TAILEALEQTRYNKTAAARLLGVTFRSLRYRLERLGIE

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=468190 HZY77_RS17515 WP_296817566.1 3522740..3524056(-) (pilR) [MAG: Thiobacillus sp. isolate SSC5]
ATGGCGACCTCACCGCGCATCCTGCTGGTTGACGACGAACCCGATCTGCTCGATCTGATGGAGCTGACCCTGGTCAAGAT
GGGACTGGAAACCGACCGCGCCGTCAGCGTCGCCGAGGCGCAGGCCCGGCTGCGGCAGACACATTACGATCTCTGCCTGA
CCGATATGCGACTGACCGACGGCGAAGGGCTGGACGTGATTGCCTGTGCCAGCGCACTGGCCTTGCCCGTTCCGGTGGCC
GTCATCACTGCCTACGGCAATGCCGGCAACGCCGTCGCCGCGCTGAAAGCGGGCGCATTCGATTATCTGGCCAAACCGGT
GGCGCTCGACCAGCTCCGTACGCTGGTCAAATCCGCGCTGACGATTCCCGAATCCGCGCAAGCTGACGACCCAAGCCGCG
AACTGATCGGGCAATCGGCCGTCATGCAGGACATCCGTGCGCGCATTGCCAAACTCGCACGGACCCAGGCGCCGGTGCAT
ATCGCGGGCGAGTCGGGCAGCGGCAAGGAACTCGCGGCACGCCTGATCCATCGTCTCGGCAACCGCTCCGGCAAGTCCTT
CGTCGCGGTCAACTGCGGCGCGATTCCCGAAACGCTGATGGAAAGCGAATTTNTCGGCTATCGAAAAGGCGCGTTCACAG
GGNCCGACACCGACCGTGACGGCTTCTTCCAGGCAGCCAACGGCGGCACCCTGTTTCTCGACGAGGTGGCCGATCTGCCG
TTGTCGATGCAGGTGAAGCTGCTGCGCGTGCTGCAGGAANAANAGGTACGCAAGGTCGGGGCCACGACCGAGGAGCCCAT
CGACGTCCGCATCGTGAGTGCCACGCATCAGGATTTATCCGCGCTTGTGGAAACGGGCCGCTTTCGCCAGGATCTGTATT
ACCGGTTGAATGTGATCGATCTCGTCATGCCGAGCTTGCGCGACCGCGCCAAGGATATCCCGGAAATGGCGCGTTTTCTG
CTCGACAAACTGNGGGGAGCCGACGTCGAACTGGATCGCGATGCGGAAAAGGCGCTCTGCGCCTATGCTNTCCCCGGCAA
TGTGCGTGAGCTGGAAAACACGCTGGAACGGGCGCTGGCGCTATGCGAAGGTCAGCATATCAACGCCGCCGACCTCAACC
TGGTGCCTGCCCTGCCAGCTGCCAGCGCCGCGCCCGGCAGCAAATATCCTCTGCAGGACTATCTCGACCAGATGGAACGC
ACCGCCATCCTCGAAGCACTGGAACAGACGCGCTACAACAAGACTGCCGCTGCCCGCCTGCTCGGCGTCACCTTCCGCAG
CCTGCGCTACCGGCTCGAACGGCTGGGGATCGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(395-434)

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

55.53

100

0.562
  pilR Acinetobacter baumannii strain A118

46.32

100

0.489
  luxO Vibrio cholerae strain A1552

39.259

92.466

0.363