Detailed information NTG0046799

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HMPREF4655_RS07545
• Genome accession: NC_017360
• Coordinates: 1539417..1540379 (-)
• Length: 320 a.a.
• NCBI ID: WP_014534693.1
• Uniprot ID: -
• Organism: Helicobacter pylori 35A
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1534417..1545379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF4655_RS07525 (HMPREF4655_21537)	-	1534722..1535654 (-)	933	WP_001002432.1	GDP-L-fucose synthase	-
HMPREF4655_RS07530 (HMPREF4655_21538)	gmd	1535647..1536792 (-)	1146	WP_041201291.1	GDP-mannose 4,6-dehydratase	-
HMPREF4655_RS07535 (HMPREF4655_21539)	-	1536806..1538218 (-)	1413	WP_000694826.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HMPREF4655_RS07540 (HMPREF4655_21540)	comB10	1538288..1539424 (-)	1137	WP_001045733.1	DNA type IV secretion system protein ComB10	Machinery gene
HMPREF4655_RS07545 (HMPREF4655_21541)	comB9	1539417..1540379 (-)	963	WP_014534693.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HMPREF4655_RS07550 (HMPREF4655_21542)	comB8	1540379..1541122 (-)	744	WP_000660529.1	virB8 family protein	Machinery gene
HMPREF4655_RS07555	comB7	1541119..1541232 (-)	114	WP_001217868.1	hypothetical protein	Machinery gene
HMPREF4655_RS07560 (HMPREF4655_21543)	comB6	1541248..1542303 (-)	1056	WP_000786700.1	P-type conjugative transfer protein TrbL	Machinery gene
HMPREF4655_RS07565 (HMPREF4655_21544)	-	1542311..1543306 (-)	996	WP_000468806.1	PDZ domain-containing protein	-
HMPREF4655_RS07570 (HMPREF4655_21545)	-	1543306..1543599 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
HMPREF4655_RS07575 (HMPREF4655_21546)	panD	1543610..1543960 (-)	351	WP_000142214.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36801.33 Da
• Isoelectric Point: 9.3455

>NTDB_id=46799 HMPREF4655_RS07545 WP_014534693.1 1539417..1540379(-) (comB9) [Helicobacter pylori 35A]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=46799 HMPREF4655_RS07545 WP_014534693.1 1539417..1540379(-) (comB9) [Helicobacter pylori 35A]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATATTAGAGAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGTGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.785	100	0.966