Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   H0S56_RS09060 Genome accession   NZ_CP059081
Coordinates   1879126..1879833 (-) Length   235 a.a.
NCBI ID   WP_004280141.1    Uniprot ID   A0A2K8USH5
Organism   Acinetobacter lwoffii strain 12CE1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1874126..1884833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS09045 (H0S56_09040) clpB 1874563..1877142 (-) 2580 WP_004646581.1 ATP-dependent chaperone ClpB -
  H0S56_RS09050 (H0S56_09045) - 1877394..1877759 (-) 366 WP_004646580.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  H0S56_RS09055 (H0S56_09050) - 1877903..1878952 (-) 1050 WP_191112402.1 NADP(H)-dependent aldo-keto reductase -
  H0S56_RS09060 (H0S56_09055) crp 1879126..1879833 (-) 708 WP_004280141.1 cAMP-activated global transcriptional regulator CRP Regulator
  H0S56_RS09065 (H0S56_09060) - 1879981..1880403 (+) 423 WP_121979955.1 OsmC family protein -
  H0S56_RS09070 (H0S56_09065) - 1880469..1881506 (-) 1038 WP_005262073.1 metallophosphoesterase -
  H0S56_RS09075 (H0S56_09070) - 1881727..1882257 (+) 531 Protein_1759 IS982 family transposase -
  H0S56_RS09085 (H0S56_09080) - 1882426..1883208 (-) 783 Protein_1760 sulfite exporter TauE/SafE family protein -
  H0S56_RS09090 (H0S56_09085) - 1883277..1884149 (-) 873 WP_195724885.1 MBL fold metallo-hydrolase -
  H0S56_RS09095 (H0S56_09090) - 1884152..1884568 (-) 417 WP_005400071.1 DUF6691 family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26255.96 Da        Isoelectric Point: 4.7275

>NTDB_id=467131 H0S56_RS09060 WP_004280141.1 1879126..1879833(-) (crp) [Acinetobacter lwoffii strain 12CE1]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNAGDF
FGEMGLFEVNPQRTAEVRTRDVCEIAEITYENFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEASEAVADGAIDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=467131 H0S56_RS09060 WP_004280141.1 1879126..1879833(-) (crp) [Acinetobacter lwoffii strain 12CE1]
ATGACTTCAAACTTTTCACAATTAAGCACTGATGCGCTTTCTCCGGGGCAATTACCAGAATCCGTGAAAGCACTGTTAAA
ACGTGCATATATTAATCGTTATCCAAAACGTACCACGATCATTGATGCAGGATCAGAATCTAAATCTTTATATTTAATTC
TGAAGGGGTCTGTATCTATCATTCTTCGTGAAGATGATGATCGTGAAATTGTCGTGGCTTATTTAAATGCGGGTGACTTC
TTTGGGGAAATGGGTCTATTCGAGGTTAATCCACAACGTACTGCGGAAGTTCGTACGCGTGATGTGTGTGAAATTGCCGA
AATTACCTATGAAAACTTTCACGAAATCAGCAAGCAATATCCTGATCTGAGCTATGCGGTATTTGCTCAATTAGTACGTC
GTTTGAAAAATACCACACGTAAAGTTACTGATCTGGCATTTATTGATGTTTCAGGCCGGATTGCACGTTGTCTGATCGAC
CTGTCTTCACAGCCAGAAGCGATGATTTTGCCGAATGGCCGTCAGATTCGTATTACCCGTCAGGAAATTGGTCGCATTGT
TGGCTGTTCCCGCGAAATGGTCGGACGTGTACTAAAAACCCTGGAAGAGCAGGGCATGATCGAAACCGATGGTAAAGCCA
TCCTGATCTTTGATGCTTCATTAGAAGAAGCATCTGAAGCAGTGGCAGATGGTGCCATAGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8USH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.064

100

0.911
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.205

82.979

0.4