Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H0S56_RS01145 Genome accession   NZ_CP059081
Coordinates   260673..262097 (-) Length   474 a.a.
NCBI ID   WP_195725472.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 255673..267097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS01130 (H0S56_01130) lptG 256727..257797 (+) 1071 WP_195725469.1 LPS export ABC transporter permease LptG -
  H0S56_RS01135 (H0S56_01135) gpmI 257922..259469 (+) 1548 WP_195725470.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  H0S56_RS01140 (H0S56_01140) - 259500..260672 (+) 1173 WP_195725471.1 S41 family peptidase -
  H0S56_RS01145 (H0S56_01145) pilR 260673..262097 (-) 1425 WP_195725472.1 sigma-54 dependent transcriptional regulator Regulator
  H0S56_RS01150 (H0S56_01150) pilS 262112..263677 (-) 1566 WP_004732491.1 PAS domain-containing sensor histidine kinase Regulator
  H0S56_RS01155 (H0S56_01155) - 263700..264335 (-) 636 WP_005108454.1 response regulator -
  H0S56_RS01160 (H0S56_01160) - 264555..265616 (+) 1062 WP_195725473.1 serine hydrolase -
  H0S56_RS01165 (H0S56_01165) thrC 265673..266812 (-) 1140 WP_004281061.1 threonine synthase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53524.74 Da        Isoelectric Point: 6.1620

>NTDB_id=467111 H0S56_RS01145 WP_195725472.1 260673..262097(-) (pilR) [Acinetobacter lwoffii strain 12CE1]
MNGEQQPLVLLVDDEEDLCTLMQMSLLRMGIRTHIAHRLEDAKKCLANHQYDACLTDLNLPDGNGLELLDWIGSLYPALP
VAVLTAYGNMEIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYSHNNPNEALEHKMLIGQSLPIQQLRITLQKIA
RSQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLIQSAHGGSLFL
DEIAELPLSMQVKLLRAVQEKRIRPLGSDTEIDVDFRVISATHQYLEALVQQGKFRQDLYFRIHVMDLTLPPLRERGQDI
LLLAEHFIQKICQEWGIPNKKLTERSKEFLLGQYYPGNVRELRNIMERAITLSDEERIDLQHLQSAPLRQALNSPQEMNT
LTSEIIATETLIAPKKLPEEGLELFLEKVEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=467111 H0S56_RS01145 WP_195725472.1 260673..262097(-) (pilR) [Acinetobacter lwoffii strain 12CE1]
ATGAATGGGGAACAACAACCACTGGTGCTTTTGGTGGATGATGAGGAAGATTTGTGTACCCTCATGCAAATGTCATTGCT
GCGCATGGGAATTCGTACGCACATTGCCCACCGTTTGGAAGATGCTAAAAAATGCCTTGCCAATCATCAATATGATGCCT
GTCTGACTGACCTAAACCTGCCCGATGGCAATGGTTTGGAGTTACTGGACTGGATTGGCAGCCTCTATCCGGCACTTCCG
GTCGCAGTTCTGACCGCCTATGGCAACATGGAAATCGCCATTGCTGCGCTCAAAGCCGGGGCCTTTGATTTTGTCAGCAA
ACCGATCAATCAGAAACATCTGGAACAACTCTTACAAAAAGCCCTGAATAAACCGGTGGATTATTCGCATAATAATCCAA
ATGAAGCGCTTGAACATAAAATGCTGATTGGACAATCCCTGCCGATCCAGCAACTACGTATTACCTTACAAAAAATTGCC
CGCTCACAAGCCCCGGTTTTTATCACTGGTGAATCAGGCACAGGTAAGGAAGTCGTGGCCAATCTGGTCCATCGCCTGAG
TAACCGCAATGAAGGTCCTTTTATTGCGATTAACTGTGGTGCCATTCCGACTGAGTTGATGGAAAGCGAACTGTTTGGGC
ATAAGAAAGGCAGCTTTACCGGCGCTGCTCAGGACAAACAGGGACTGATTCAATCTGCCCATGGTGGCAGTCTGTTTCTG
GATGAAATTGCAGAATTACCGCTTTCTATGCAGGTCAAATTGTTACGTGCCGTACAGGAAAAACGTATTCGTCCACTCGG
TTCAGATACCGAAATTGATGTGGATTTCCGCGTGATCAGTGCCACCCATCAGTATCTGGAAGCCTTGGTGCAACAAGGCA
AATTCCGTCAGGATTTATATTTTCGCATTCATGTAATGGATCTGACTTTACCGCCATTGCGTGAACGCGGCCAAGATATT
CTGTTATTGGCCGAACACTTTATTCAGAAGATTTGCCAGGAATGGGGAATTCCTAATAAAAAACTGACCGAACGCAGCAA
AGAGTTCTTATTGGGACAATATTATCCAGGTAATGTACGTGAATTGCGTAATATTATGGAACGCGCGATTACTTTAAGTG
ATGAAGAGCGGATTGATCTTCAGCATTTGCAGAGTGCACCGCTGCGTCAGGCGCTAAACAGCCCTCAGGAGATGAATACG
CTCACCAGCGAGATCATTGCGACCGAAACCCTGATTGCACCTAAAAAGCTGCCTGAAGAGGGTTTAGAGCTGTTTTTGGA
AAAGGTCGAGAAAGAAATTTTACTCAATGCGCTGAATCTGACCCACTGGAACCGGACACTGGCCGCCAAAAAACTCGGCA
TGTCGTTCCGTTCCCTGCGCTATCGCTTGAAAAAGTTCGGACTGGATACCGAAGAAGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(425-466)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(142-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

73.84

100

0.738
  pilR Pseudomonas aeruginosa PAK

48.807

97.257

0.475