Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   H0S56_RS01150 Genome accession   NZ_CP059081
Coordinates   262112..263677 (-) Length   521 a.a.
NCBI ID   WP_004732491.1    Uniprot ID   N9NYP4
Organism   Acinetobacter lwoffii strain 12CE1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 257112..268677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS01135 (H0S56_01135) gpmI 257922..259469 (+) 1548 WP_195725470.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  H0S56_RS01140 (H0S56_01140) - 259500..260672 (+) 1173 WP_195725471.1 S41 family peptidase -
  H0S56_RS01145 (H0S56_01145) pilR 260673..262097 (-) 1425 WP_195725472.1 sigma-54 dependent transcriptional regulator Regulator
  H0S56_RS01150 (H0S56_01150) pilS 262112..263677 (-) 1566 WP_004732491.1 PAS domain-containing sensor histidine kinase Regulator
  H0S56_RS01155 (H0S56_01155) - 263700..264335 (-) 636 WP_005108454.1 response regulator -
  H0S56_RS01160 (H0S56_01160) - 264555..265616 (+) 1062 WP_195725473.1 serine hydrolase -
  H0S56_RS01165 (H0S56_01165) thrC 265673..266812 (-) 1140 WP_004281061.1 threonine synthase -
  H0S56_RS01170 (H0S56_01170) - 266869..268176 (-) 1308 WP_034605826.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59639.90 Da        Isoelectric Point: 6.2943

>NTDB_id=467112 H0S56_RS01150 WP_004732491.1 262112..263677(-) (pilS) [Acinetobacter lwoffii strain 12CE1]
MAQQKNYAELNQYHLGIWYSAYRLLISTGLLLIFMLTYPELTTDYQYPQLYYYALGIGVAINTVQLFVLKWIRRLIQPQL
IMIFFSDVCVLSLLTLASDGPNLQIGLLFVITIFSASLLLDAKKALVVTLIAVISVIYQHFIGSIFAFSSLSNISNSALL
AFLFFVVYGTGQIAVRRFQILENLNFSQSLELHRLQNINRYILEQIETGYLVLDENYHVVLSNPAACNLLGIESKYGHEK
FTLSQSQPDLFELIHFETLENGERFQFESQQSRYNIHVQVQKLIVPHQTLMLLVLQDAKKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSETEQQQLLQQMIGRQATRIDRIIQDTLNMVKNKETHPIPIHLNEFIPLFIQEDLADIRD
QIQFNIDIPLVIQFDEAQFRQILINLIRNAIRHNSADAAYIQLNVHPYEHRVWIDVRDFGSGVAVHDQALLFKPFFSTSI
SGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=467112 H0S56_RS01150 WP_004732491.1 262112..263677(-) (pilS) [Acinetobacter lwoffii strain 12CE1]
ATGGCACAACAAAAAAACTATGCTGAACTGAATCAATACCATCTCGGTATCTGGTACAGCGCTTATCGTCTGCTGATCAG
TACCGGTTTGTTGCTGATTTTTATGCTGACCTACCCCGAACTCACCACCGATTATCAATACCCGCAGCTGTATTATTATG
CACTGGGAATCGGGGTTGCGATCAATACCGTACAGCTGTTTGTGCTGAAATGGATCAGACGCTTGATCCAGCCGCAGCTG
ATTATGATTTTCTTTAGCGATGTCTGCGTTTTAAGTTTGCTGACTTTGGCGAGCGACGGTCCTAATCTGCAAATTGGGCT
GCTGTTTGTGATTACTATCTTTTCTGCATCTTTATTATTAGATGCAAAAAAGGCCTTGGTCGTCACCCTCATTGCAGTCA
TTAGTGTTATTTATCAGCATTTTATCGGCAGTATTTTTGCGTTTTCTTCACTCAGCAATATCAGTAATAGCGCCCTGCTG
GCCTTTTTGTTTTTTGTGGTTTATGGCACTGGACAAATTGCCGTGCGCCGTTTTCAGATTCTGGAAAATTTGAATTTTTC
TCAATCGCTGGAACTGCATCGCTTACAGAATATTAACCGCTATATTCTGGAACAGATTGAAACCGGTTATCTGGTTCTGG
ATGAAAACTATCATGTGGTACTCAGTAATCCTGCCGCCTGTAATCTTCTTGGAATTGAGTCCAAATACGGCCATGAGAAA
TTTACTTTATCTCAATCACAGCCAGATTTATTTGAACTGATCCATTTTGAAACGCTAGAAAATGGTGAGCGCTTTCAGTT
TGAATCCCAGCAAAGTCGCTATAATATTCATGTGCAGGTGCAAAAACTGATTGTGCCACATCAGACTCTAATGCTACTGG
TGTTACAGGATGCCAAAAAACTGAATCAGCAGGTGCAGCAACTTAAACTTGCTGCACTGGGTCAACTCTCAGCCAGTATT
GCCCATGAAATTCGTAACCCCTTGGCGGCCATTGTGCAGGCCAATGATTTGTATCTGGACTCAGAAACTGAACAGCAACA
GCTACTCCAGCAGATGATTGGCCGACAGGCGACCCGGATTGACCGGATTATTCAGGACACGCTGAATATGGTCAAAAATA
AAGAAACCCACCCGATACCGATTCATCTCAATGAATTTATCCCGTTATTTATCCAGGAAGATCTGGCCGATATTCGCGAT
CAGATTCAATTTAATATTGATATCCCGCTAGTGATTCAGTTTGATGAAGCACAATTCCGGCAAATCCTGATTAATCTGAT
TCGTAATGCCATTCGTCACAATTCAGCAGATGCAGCCTATATTCAGCTGAATGTGCATCCTTATGAACATCGGGTCTGGA
TTGATGTACGGGATTTTGGCTCTGGCGTAGCCGTACATGATCAAGCTCTATTGTTCAAACCCTTTTTTAGCACATCGATT
AGTGGTACCGGATTAGGATTGTATTTATCACATAGTTTTTGCGAAGCAAATCAGGCACAATTAAACTATATACAACAAGA
ACAGGGCGCATGCTTTCGCATCAGCTGTCAACGTATTACGCTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9NYP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.03

96.929

0.553