Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   H0S57_RS03170 Genome accession   NZ_CP059080
Coordinates   684365..684763 (+) Length   132 a.a.
NCBI ID   WP_151836219.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain E10B     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 679365..689763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS03155 (H0S57_03155) - 680353..682659 (+) 2307 WP_004979149.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  H0S57_RS03160 (H0S57_03160) - 682699..683466 (-) 768 WP_151836221.1 SDR family oxidoreductase -
  H0S57_RS03165 (H0S57_03165) mazG 683585..684346 (+) 762 WP_151836220.1 nucleoside triphosphate pyrophosphohydrolase -
  H0S57_RS03170 (H0S57_03170) comEA 684365..684763 (+) 399 WP_151836219.1 ComEA family DNA-binding protein Machinery gene
  H0S57_RS03175 (H0S57_03175) pcnB 684902..686371 (+) 1470 WP_195728630.1 polynucleotide adenylyltransferase PcnB -
  H0S57_RS03180 (H0S57_03180) folK 686368..686856 (+) 489 WP_195728631.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  H0S57_RS03185 (H0S57_03185) panB 686893..687702 (+) 810 WP_195728632.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  H0S57_RS03190 (H0S57_03190) panC 687706..688548 (+) 843 WP_125280939.1 pantoate--beta-alanine ligase -
  H0S57_RS03195 (H0S57_03195) rapZ 688575..689426 (+) 852 WP_004692298.1 RNase adapter RapZ -
  H0S57_RS03200 (H0S57_03200) - 689423..689692 (+) 270 WP_010325935.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14681.19 Da        Isoelectric Point: 10.8498

>NTDB_id=467081 H0S57_RS03170 WP_151836219.1 684365..684763(+) (comEA) [Acinetobacter johnsonii strain E10B]
MIKIKVSLLIIALLLLSLLAWIPSSYAQSFDQNYLNWKAEQQAWDDRIQAPKSVKRAVSPVQAQPVLSTNKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKSIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=467081 H0S57_RS03170 WP_151836219.1 684365..684763(+) (comEA) [Acinetobacter johnsonii strain E10B]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATCGCGTTGTTATTACTGAGTTTACTGGCGTGGATACCTAGTAGTTATGC
ACAGTCTTTTGATCAGAACTACCTGAATTGGAAAGCAGAGCAGCAGGCGTGGGATGATCGTATTCAAGCTCCTAAAAGCG
TGAAACGTGCTGTGTCTCCTGTTCAGGCTCAACCTGTGTTGAGCACAAATAAAATTAGTTTAAATCAAGCCAGTGTTGAT
CAATTACAGCAACTTCAGGGTGTGGGTCTAAAAAAGGCACAGGCAATCGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GAGCATAGATGAGCTGCAGCAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACCCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

54.098

92.424

0.5
  comEA Acinetobacter baumannii D1279779

51.613

93.939

0.485
  comEA Acinetobacter baylyi ADP1

45.794

81.061

0.371