NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	H0S57_RS01840	Genome accession	NZ_CP059080
Coordinates	406824..407684 (-)	Length	286 a.a.
NCBI ID	WP_058868793.1	Uniprot ID	-
Organism	Acinetobacter johnsonii strain E10B
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 401824..412684

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0S57_RS01815 (H0S57_01815)	recN	401983..403644 (-)	1662	WP_195728532.1	DNA repair protein RecN	-
H0S57_RS01820 (H0S57_01820)	-	404036..404359 (+)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
H0S57_RS01825 (H0S57_01825)	rlmB	404502..405251 (+)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H0S57_RS01830 (H0S57_01830)	-	405284..406201 (+)	918	WP_195728533.1	DMT family transporter	-
H0S57_RS01835 (H0S57_01835)	coaE	406216..406815 (-)	600	WP_195728534.1	dephospho-CoA kinase	-
H0S57_RS01840 (H0S57_01840)	pilD	406824..407684 (-)	861	WP_058868793.1	A24 family peptidase	Machinery gene
H0S57_RS01845 (H0S57_01845)	pilC	407684..408910 (-)	1227	WP_010325767.1	type II secretion system F family protein	Machinery gene
H0S57_RS01850 (H0S57_01850)	pilB	408941..410653 (-)	1713	WP_195728535.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H0S57_RS01855 (H0S57_01855)	tpiA	410933..411724 (+)	792	WP_195728536.1	triose-phosphate isomerase	-
H0S57_RS01860 (H0S57_01860)	secG	411738..412067 (+)	330	WP_004692710.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32001.45 Da Isoelectric Point: 8.0564

                                >NTDB_id=467075 H0S57_RS01840 WP_058868793.1 406824..407684(-) (pilD) [Acinetobacter johnsonii strain E10B]

MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLSLSKPASTCPQCKSA

IRWYQNVPVMSWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR

YTLTLAALGLGVNSYAIYTTPTMAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

Download Length: 861 bp

                                >NTDB_id=467075 H0S57_RS01840 WP_058868793.1 406824..407684(-) (pilD) [Acinetobacter johnsonii strain E10B]

ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG

TAGTTTTCTAAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC

ATCCTGAACAGCCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCCAATGTAAAAGTGCC

ATACGCTGGTATCAAAATGTCCCTGTGATGAGTTGGTTACTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG

TATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCATTGGTCGTGGTTGCAGTCTTTGGCCCAACAATCCAAA

TGTTGTTTGGTCTCGTACTCACTTATATTTTAATCGCCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC

TATACCCTCACCCTTGCAGCTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCAACGATGGCTATTTGGGG

TTACATCATTGGCTTTTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGTAAGGAAGGTATGGGTTATG

GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC

GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGTCCATATATTGCCAT

CGCAGGTTGGATTGCCTTTCTGTGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	79.371	100	0.794
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	53.558	93.357	0.5
pilD	Vibrio campbellii strain DS40M4	52.06	93.357	0.486
pilD	Neisseria gonorrhoeae MS11	45.421	95.455	0.434

Detailed information NTG0467075