Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   H0S58_RS12645 Genome accession   NZ_CP059079
Coordinates   2714068..2715279 (+) Length   403 a.a.
NCBI ID   WP_195726681.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2709068..2720279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS12625 (H0S58_12630) - 2709575..2711638 (-) 2064 WP_195726678.1 TonB-dependent copper receptor -
  H0S58_RS12630 (H0S58_12635) - 2711728..2712153 (-) 426 WP_195726679.1 DUF2946 family protein -
  H0S58_RS12635 (H0S58_12640) def 2712243..2712773 (-) 531 WP_053579005.1 peptide deformylase -
  H0S58_RS12640 (H0S58_12645) tsaP 2712893..2714047 (+) 1155 WP_195726680.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  H0S58_RS12645 (H0S58_12650) dprA 2714068..2715279 (+) 1212 WP_195726681.1 DNA-processing protein DprA Machinery gene
  H0S58_RS12650 (H0S58_12655) - 2715322..2715891 (+) 570 WP_195726682.1 L-threonylcarbamoyladenylate synthase -
  H0S58_RS12655 (H0S58_12660) - 2716260..2717168 (-) 909 WP_195726683.1 DMT family transporter -
  H0S58_RS12660 (H0S58_12665) - 2717318..2718090 (+) 773 Protein_2460 AraC family transcriptional regulator -
  H0S58_RS12665 (H0S58_12670) - 2718262..2718795 (+) 534 WP_092720210.1 hypothetical protein -
  H0S58_RS12670 (H0S58_12675) - 2718952..2719497 (+) 546 WP_195726684.1 glutathione peroxidase -

Sequence


Protein


Download         Length: 403 a.a.        Molecular weight: 45079.36 Da        Isoelectric Point: 6.9679

>NTDB_id=467063 H0S58_RS12645 WP_195726681.1 2714068..2715279(+) (dprA) [Acinetobacter sp. TTH0-4 strain 1BD1]
MLNPLSETQVATITLWYLVQHSLSSFYKLEKYFGTVSQAVDPKNFSQWSTLALHKNHLQRLSEFQTEAGQQNFKHLIQDI
QKHTDFILTLNQPDYPTQLLPYTNKPPILFGQGNAQALLQPQIAIVGSRKPSTHGRQVAYDFAYYLSDQGFYVTSGLAEG
IDEAAHQGALRHNRTIAVMGTGLDQTYPSLHQQLRQHIIAQSGTIITEFLPGTPPLQQHFPRRNRIVSALSLGVIVAEAA
LKSGSLITAKWAAEQGKLIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQVVEDLALPTQWQCQQRNDQTQIVNQISPKE
SQAVQQLSALPSAVQPSPLNQIHIPQNLLSLYNQLDWIGQSIDDLIIKLNLDISTLTSQLMELELLGLCMQQGGLYLRCR
ASK

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=467063 H0S58_RS12645 WP_195726681.1 2714068..2715279(+) (dprA) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGTTGAACCCTTTATCCGAGACGCAAGTTGCCACAATTACGTTATGGTATTTGGTTCAGCATTCTCTTTCGAGTTTTTA
TAAATTAGAAAAATATTTTGGTACAGTGTCACAAGCAGTTGATCCAAAAAACTTTTCACAATGGTCGACTCTTGCGCTGC
ATAAAAATCACTTACAGCGTCTCAGTGAATTTCAAACTGAAGCTGGCCAACAAAATTTTAAACACTTAATTCAAGATATT
CAAAAGCATACTGATTTCATTTTAACCTTGAATCAGCCCGACTATCCGACCCAACTGTTGCCCTATACAAACAAACCACC
GATTCTTTTTGGTCAAGGCAATGCACAAGCTTTACTACAGCCTCAAATCGCGATTGTCGGCAGTCGTAAACCCAGTACAC
ATGGACGGCAAGTGGCTTATGATTTTGCTTACTACTTAAGTGATCAAGGTTTTTATGTGACGAGTGGTTTAGCCGAAGGT
ATTGATGAAGCCGCACATCAAGGGGCTTTACGGCATAATCGTACTATTGCTGTAATGGGCACAGGACTGGATCAAACCTA
CCCAAGTCTACATCAGCAGCTCAGACAGCATATTATTGCCCAATCAGGGACAATTATTACTGAATTTTTACCCGGTACAC
CTCCATTACAACAACATTTTCCACGGCGCAACAGGATTGTCAGTGCTTTAAGTCTCGGAGTCATTGTTGCAGAAGCCGCA
CTCAAAAGTGGTTCACTCATCACAGCAAAATGGGCTGCTGAACAAGGTAAATTAATTTTTGCGATTCCGGGTCATATTTA
TAGCGAACACCACCAAGGCTGCCATCAACTGATTCGTGAAGGTGCTATTTTAGTTGACCATCCTGAACAGGTGGTTGAAG
ATCTGGCGCTTCCAACCCAATGGCAATGTCAGCAAAGAAATGATCAAACACAAATTGTAAATCAGATTTCACCCAAAGAA
AGTCAAGCCGTACAGCAACTCTCAGCGTTACCAAGCGCTGTCCAGCCCTCTCCACTAAACCAAATACACATTCCTCAAAA
TTTGCTCTCGCTCTATAACCAGCTCGACTGGATTGGACAATCGATTGATGATCTGATTATTAAACTAAATTTAGATATCA
GTACGTTAACCAGTCAATTAATGGAGCTAGAATTACTCGGTTTGTGTATGCAACAAGGTGGTTTGTATCTACGTTGTCGT
GCAAGCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

63.84

99.504

0.635

  dprA Acinetobacter baumannii D1279779

63.342

99.504

0.63

  dprA Acinetobacter baylyi ADP1

59.352

99.504

0.591