NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	H0S59_RS19055	Genome accession	NZ_CP059078
Coordinates	381950..382810 (-)	Length	286 a.a.
NCBI ID	WP_022575844.1	Uniprot ID	A0A2T7FRH3
Organism	Acinetobacter nosocomialis strain WM98B
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 376950..387810

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0S59_RS01785 (H0S59_01785)	-	377841..379151 (+)	1311	WP_033846384.1	tetratricopeptide repeat protein	-
H0S59_RS01790 (H0S59_01790)	-	379228..379554 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
H0S59_RS01795 (H0S59_01795)	rlmB	379656..380405 (+)	750	WP_002156969.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H0S59_RS01800 (H0S59_01800)	-	380441..381355 (+)	915	WP_033846385.1	DMT family transporter	-
H0S59_RS01805 (H0S59_01805)	coaE	381352..381948 (-)	597	WP_004883551.1	dephospho-CoA kinase	-
H0S59_RS19055 (H0S59_01810)	pilD	381950..382810 (-)	861	WP_022575844.1	A24 family peptidase	Machinery gene
H0S59_RS01815 (H0S59_01815)	pilC	382810..384036 (-)	1227	WP_033846386.1	type II secretion system F family protein	Machinery gene
H0S59_RS01820 (H0S59_01820)	pilB	384064..385776 (-)	1713	WP_031952279.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H0S59_RS01825 (H0S59_01825)	tpiA	386067..386861 (+)	795	WP_004710827.1	triose-phosphate isomerase	-
H0S59_RS01830 (H0S59_01830)	secG	386874..387203 (+)	330	WP_002156913.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32107.52 Da Isoelectric Point: 7.1784

                                >NTDB_id=467026 H0S59_RS19055 WP_022575844.1 381950..382810(-) (pilD) [Acinetobacter nosocomialis strain WM98B]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACHQP

IRWYQNIPLISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=467026 H0S59_RS19055 WP_022575844.1 381950..382810(-) (pilD) [Acinetobacter nosocomialis strain WM98B]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTGAATGTAGTGATTTACCGCACACCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA

ATCCTGAGCAACCCATTATCGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCATGCCCTGCATGCCATCAACCG

ATCCGTTGGTATCAAAATATCCCACTCATAAGCTGGCTAGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG

CATTCGCTATCCAGCCATCGAACTACTTACCATGCTATGTTCATTGGTGGTGGTTATGGTGTTTGGTCCAACCATACAAA

TGCTTTTTGGACTGGTCCTCACATGGGTACTGATAGCACTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTACCTTTAGCTGCGCTTGGTTTAGGCATTAACACCTTTAATATCTACACCTCACCCAACTCGGCCATTTGGGG

TTACCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTAATTACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCATTTGCATTTGGGCCATATATTGCCAT

TGCAGGTTGGGTTGCCTTTTTATGGGGTGATCAAATTATGAAAATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2T7FRH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	100	100	1
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0467026