Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H0A61_RS06390 Genome accession   NZ_CP059066
Coordinates   1354360..1354680 (+) Length   106 a.a.
NCBI ID   WP_277817253.1    Uniprot ID   -
Organism   Koleobacter methoxysyntrophicus strain NRmbB1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349360..1359680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A61_RS06365 (H0A61_01271) ftcD 1349998..1350900 (+) 903 WP_206709117.1 glutamate formimidoyltransferase -
  H0A61_RS06370 (H0A61_01272) hutI 1350907..1352175 (+) 1269 WP_206709118.1 imidazolonepropionase -
  H0A61_RS06375 (H0A61_01273) - 1352166..1352783 (+) 618 WP_206709119.1 cyclodeaminase/cyclohydrolase family protein -
  H0A61_RS06380 (H0A61_01274) - 1352851..1353753 (+) 903 WP_206709120.1 patatin-like phospholipase family protein -
  H0A61_RS15530 - 1353862..1353984 (+) 123 WP_277817236.1 hypothetical protein -
  H0A61_RS06390 (H0A61_01275) pilR 1354360..1354680 (+) 321 WP_277817253.1 sigma 54-interacting transcriptional regulator Regulator
  H0A61_RS15535 - 1354708..1354842 (+) 135 WP_277817237.1 hypothetical protein -
  H0A61_RS06395 (H0A61_01276) - 1355004..1355396 (-) 393 WP_241754983.1 type II toxin-antitoxin system VapC family toxin -
  H0A61_RS06400 vapB 1355405..1355761 (-) 357 WP_206709123.1 type II toxin-antitoxin system VapB family antitoxin -
  H0A61_RS06405 (H0A61_01278) - 1356018..1357130 (+) 1113 WP_206709124.1 DUF362 domain-containing protein -
  H0A61_RS06410 (H0A61_01279) - 1357331..1358956 (-) 1626 WP_206709125.1 IS1634 family transposase -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11889.83 Da        Isoelectric Point: 9.8098

>NTDB_id=466946 H0A61_RS06390 WP_277817253.1 1354360..1354680(+) (pilR) [Koleobacter methoxysyntrophicus strain NRmbB1]
MGYEKGAFTGVLSKKPGKFELADGSTLFLDEVGELSLNVQAKLLRAIQEKAFERLGGTCTVKVDVRIIAATNKNLQKAVE
EGKFRDDLYYRINVINLEVPPLRFRK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=466946 H0A61_RS06390 WP_277817253.1 1354360..1354680(+) (pilR) [Koleobacter methoxysyntrophicus strain NRmbB1]
ATCGGTTATGAAAAAGGGGCTTTTACAGGGGTGCTGTCCAAAAAGCCGGGGAAGTTTGAACTGGCGGATGGCAGTACCCT
TTTTCTTGATGAAGTGGGAGAGCTGTCTCTAAACGTTCAGGCCAAACTTTTGCGGGCTATTCAGGAAAAGGCCTTTGAAC
GGCTCGGTGGAACCTGTACAGTAAAGGTAGATGTCAGGATAATTGCCGCCACCAATAAGAATCTGCAGAAAGCTGTAGAA
GAAGGTAAATTCCGTGATGACCTTTACTATCGTATCAATGTAATCAATCTGGAGGTCCCACCACTAAGGTTCAGGAAATA
A

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(2-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.095

99.057

0.575
  luxO Vibrio cholerae strain A1552

52.885

98.113

0.519
  pilR Acinetobacter baumannii strain A118

48.077

98.113

0.472