Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   H0N28_RS16615 Genome accession   NZ_CP059041
Coordinates   3498194..3498676 (-) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3493194..3503676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N28_RS16580 (H0N28_16585) - 3493302..3494336 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  H0N28_RS16585 (H0N28_16590) - 3494451..3495392 (+) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  H0N28_RS16590 (H0N28_16595) rplS 3495444..3495812 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  H0N28_RS16595 (H0N28_16600) trmD 3496020..3496760 (-) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H0N28_RS16600 (H0N28_16605) rimM 3496806..3497354 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  H0N28_RS16605 (H0N28_16610) rpsP 3497374..3497625 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  H0N28_RS16610 (H0N28_16615) pilE 3497772..3498197 (-) 426 WP_000788346.1 type IV pilin protein Machinery gene
  H0N28_RS16615 (H0N28_16620) pilY2 3498194..3498676 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  H0N28_RS16620 (H0N28_16625) pilY1 3498689..3502543 (-) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  H0N28_RS16625 (H0N28_16630) pilX 3502555..3503373 (-) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=466654 H0N28_RS16615 WP_001046417.1 3498194..3498676(-) (pilY2) [Acinetobacter baumannii strain ATCC 17978]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=466654 H0N28_RS16615 WP_001046417.1 3498194..3498676(-) (pilY2) [Acinetobacter baumannii strain ATCC 17978]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444