Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   H0N28_RS16625 Genome accession   NZ_CP059041
Coordinates   3502555..3503373 (-) Length   272 a.a.
NCBI ID   WP_000149378.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3497555..3508373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N28_RS16610 (H0N28_16615) pilE 3497772..3498197 (-) 426 WP_000788346.1 type IV pilin protein Machinery gene
  H0N28_RS16615 (H0N28_16620) pilY2 3498194..3498676 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  H0N28_RS16620 (H0N28_16625) pilY1 3498689..3502543 (-) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  H0N28_RS16625 (H0N28_16630) pilX 3502555..3503373 (-) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H0N28_RS16630 (H0N28_16635) pilW 3503370..3504371 (-) 1002 WP_000079196.1 PilW family protein Machinery gene
  H0N28_RS16635 (H0N28_16640) pilV 3504372..3504932 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H0N28_RS16640 (H0N28_16645) fimU 3504926..3505399 (-) 474 WP_001214058.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H0N28_RS16645 (H0N28_16650) ispH 3505569..3506519 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H0N28_RS16650 (H0N28_16655) gmk 3506642..3507271 (+) 630 WP_000015937.1 guanylate kinase -
  H0N28_RS16655 (H0N28_16660) rpoZ 3507344..3507622 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H0N28_RS16660 (H0N28_16665) - 3507661..3507791 (+) 131 Protein_3277 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28862.69 Da        Isoelectric Point: 5.6905

>NTDB_id=466656 H0N28_RS16625 WP_000149378.1 3502555..3503373(-) (pilX) [Acinetobacter baumannii strain ATCC 17978]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMTDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=466656 H0N28_RS16625 WP_000149378.1 3502555..3503373(-) (pilX) [Acinetobacter baumannii strain ATCC 17978]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGACTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989