Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   H0N28_RS02960 Genome accession   NZ_CP059041
Coordinates   639107..639517 (+) Length   136 a.a.
NCBI ID   WP_001200147.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634107..644517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N28_RS02945 (H0N28_02945) - 635096..637402 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  H0N28_RS02950 (H0N28_02950) - 637447..638220 (-) 774 WP_000682838.1 SDR family oxidoreductase -
  H0N28_RS02955 (H0N28_02955) mazG 638332..639138 (+) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  H0N28_RS02960 (H0N28_02960) comEA 639107..639517 (+) 411 WP_001200147.1 ComEA family DNA-binding protein Machinery gene
  H0N28_RS02965 (H0N28_02965) pcnB 639642..641105 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  H0N28_RS02970 (H0N28_02970) folK 641102..641584 (+) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  H0N28_RS02975 (H0N28_02975) panB 641630..642439 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  H0N28_RS02980 (H0N28_02980) panC 642443..643291 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  H0N28_RS02985 (H0N28_02985) rapZ 643314..644165 (+) 852 WP_000821671.1 RNase adapter RapZ -
  H0N28_RS02990 (H0N28_02990) - 644162..644431 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15690.99 Da        Isoelectric Point: 10.4475

>NTDB_id=466636 H0N28_RS02960 WP_001200147.1 639107..639517(+) (comEA) [Acinetobacter baumannii strain ATCC 17978]
MQYSMRFWKNKYFVLIMLCLGGISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=466636 H0N28_RS02960 WP_001200147.1 639107..639517(+) (comEA) [Acinetobacter baumannii strain ATCC 17978]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGGAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baumannii strain A118

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

44.444

92.647

0.412