Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   JQM34_RS08770 Genome accession   NZ_CP069427
Coordinates   1847574..1848623 (+) Length   349 a.a.
NCBI ID   WP_125389402.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1842574..1853623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS08750 (JQM34_0001786) dnaJ 1844495..1845631 (+) 1137 WP_001066307.1 molecular chaperone DnaJ -
  JQM34_RS08755 (JQM34_0001787) - 1846071..1846358 (-) 288 WP_200370897.1 hypothetical protein -
  JQM34_RS08760 (JQM34_0001788) - 1846368..1846778 (-) 411 WP_007519264.1 HIT family protein -
  JQM34_RS08765 (JQM34_0001789) pptA 1846846..1847577 (+) 732 WP_200370899.1 ABC transporter ATP-binding protein Regulator
  JQM34_RS08770 (JQM34_0001790) pptB 1847574..1848623 (+) 1050 WP_125389402.1 ABC transporter permease Regulator
  JQM34_RS08775 (JQM34_0001791) - 1848671..1849465 (+) 795 WP_000363019.1 phosphotransferase family protein -
  JQM34_RS08780 (JQM34_0001792) trmB 1849462..1850097 (+) 636 WP_001266088.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  JQM34_RS08785 (JQM34_0001793) rimP 1850224..1850703 (+) 480 WP_000338692.1 ribosome maturation factor RimP -
  JQM34_RS08790 (JQM34_0001794) nusA 1850746..1851882 (+) 1137 WP_000032278.1 transcription termination factor NusA -
  JQM34_RS08795 (JQM34_0001795) - 1851904..1852197 (+) 294 WP_000857560.1 YlxR family protein -
  JQM34_RS08800 (JQM34_0001796) - 1852190..1852489 (+) 300 WP_200370901.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40413.49 Da        Isoelectric Point: 9.9308

>NTDB_id=466557 JQM34_RS08770 WP_125389402.1 1847574..1848623(+) (pptB) [Streptococcus oralis strain SF100]
MKDLFLKRKQAFRKECVSYLRYVLNDHFVLFLLVLIGFLAYQYSQLLQHFPENHWPILLFLVIVSILLLAWGGIATYMEG
PDKLFLLVSEEEVKSHLKGQTVRSLVFWLFVQTLFLLLFAPLFLAMGYGLPVLLIYVLLLGAGKYLLFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGVSNSVKRRAYLDFILKAVQKVPSKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLALLFIEQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLEKGEKEKGLKQIVVGVGSAVLLLELLVGAVVFQE
KIALLPLVGASLFLQLFYLPYQLKRLVDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=466557 JQM34_RS08770 WP_125389402.1 1847574..1848623(+) (pptB) [Streptococcus oralis strain SF100]
ATGAAAGACTTGTTTTTAAAGCGAAAGCAGGCTTTTCGTAAGGAGTGTGTCAGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTAGTTCTCATCGGTTTTCTAGCTTACCAGTACAGTCAACTCCTGCAACATTTTCCTGAAAACC
ACTGGCCTATTCTCTTGTTTTTAGTAATAGTATCTATCTTGCTTTTGGCTTGGGGAGGAATCGCGACCTACATGGAAGGA
CCTGACAAGCTCTTTCTCTTAGTCAGTGAAGAGGAGGTTAAGTCTCACCTCAAAGGGCAGACAGTGCGCTCACTAGTCTT
TTGGCTCTTTGTCCAAACCCTTTTCTTGCTTTTATTTGCGCCCTTATTTTTAGCCATGGGTTATGGCTTGCCAGTTCTTC
TCATCTATGTGCTTTTATTGGGAGCTGGGAAATATCTCCTCTTTCGCCAAAAAGCCAGTAAATTTTTTACTGAGACTGGT
CTCGACTGGGACTATGTGATCTCTCAAGAAAGCAAGCGCAAGCAAGTCTTGCTTCGTTTCTTTGCTCTCTTTACTCAGGT
CAAGGGCGTTTCAAATAGTGTCAAACGTCGCGCTTATCTGGATTTCATCCTTAAAGCAGTTCAGAAAGTGCCGAGCAAGA
TTTGGCAAAACCTCTATCTCCGTTCTTACTTGCGAAATGGAGACCTCTTTGCGCTTAGTTTGCGTCTTTTGCTCCTATCC
TTGTTAGCTTTGCTCTTTATCGAGCAATCTTGGATAGCGACGGCAGTGGTGGTTCTATTTAATTACCTCTTGCTCTTTCA
GTTACTGGCCCTCTATCATGCCTTTGATTACCAATACTTGACCCAGCTCTTTCCACTAGAAAAAGGGGAGAAAGAAAAGG
GATTGAAACAGATTGTAGTCGGTGTGGGAAGTGCAGTTCTTTTGCTGGAATTACTGGTCGGAGCAGTGGTTTTTCAAGAA
AAAATAGCCTTGTTGCCTCTTGTAGGAGCTAGTCTTTTCCTACAATTGTTTTATTTGCCTTACCAACTAAAAAGATTGGT
TGACGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.414

99.713

0.473

  pptB Streptococcus thermophilus LMD-9

46.264

99.713

0.461