Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   H0N27_RS02280 Genome accession   NZ_CP059039
Coordinates   473210..474094 (+) Length   294 a.a.
NCBI ID   WP_032031441.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 468210..479094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N27_RS02255 (H0N27_02255) - 468608..469855 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  H0N27_RS02260 (H0N27_02260) wrbA 470143..470736 (+) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  H0N27_RS02265 (H0N27_02265) - 470789..471364 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  H0N27_RS02270 (H0N27_02270) - 471437..472150 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  H0N27_RS02275 (H0N27_02275) - 472308..472979 (-) 672 WP_001193955.1 hypothetical protein -
  H0N27_RS02280 (H0N27_02280) tonB2 473210..474094 (+) 885 WP_032031441.1 energy transducer TonB Machinery gene
  H0N27_RS02285 (H0N27_02285) ybeY 474184..474660 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  H0N27_RS02290 (H0N27_02290) - 474670..475758 (-) 1089 WP_000122983.1 PhoH family protein -
  H0N27_RS02295 (H0N27_02295) miaB 475796..477247 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33680.56 Da        Isoelectric Point: 9.0935

>NTDB_id=466556 H0N27_RS02280 WP_032031441.1 473210..474094(+) (tonB2) [Acinetobacter baumannii strain A118]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPTPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=466556 H0N27_RS02280 WP_032031441.1 473210..474094(+) (tonB2) [Acinetobacter baumannii strain A118]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAACGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGCCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993