Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HZU75_RS05745 Genome accession   NZ_CP058952
Coordinates   1234725..1236101 (-) Length   458 a.a.
NCBI ID   WP_180308201.1    Uniprot ID   A0A7D5ZIH6
Organism   Chitinibacter fontanus strain STM-7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229725..1241101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZU75_RS05720 (HZU75_05720) - 1229833..1230264 (+) 432 WP_180308196.1 CBS domain-containing protein -
  HZU75_RS05725 (HZU75_05725) - 1230323..1230949 (+) 627 WP_180308197.1 pyrimidine 5'-nucleotidase -
  HZU75_RS05730 (HZU75_05730) - 1230979..1232871 (-) 1893 WP_180308198.1 potassium transporter Kup -
  HZU75_RS05735 (HZU75_05735) ampD 1232978..1233580 (-) 603 WP_180308199.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HZU75_RS05740 (HZU75_05740) phnD 1233641..1234627 (-) 987 WP_180308200.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  HZU75_RS05745 (HZU75_05745) pilR 1234725..1236101 (-) 1377 WP_180308201.1 sigma-54 dependent transcriptional regulator Regulator
  HZU75_RS05750 (HZU75_05750) - 1236085..1237668 (-) 1584 WP_180308202.1 PAS domain-containing sensor histidine kinase -
  HZU75_RS05755 (HZU75_05755) - 1237713..1238216 (-) 504 WP_180308203.1 RNA pyrophosphohydrolase -
  HZU75_RS05760 (HZU75_05760) - 1238355..1239143 (-) 789 WP_180308204.1 fused MFS/spermidine synthase -
  HZU75_RS05765 (HZU75_05765) ttcA 1239143..1240096 (-) 954 WP_180308205.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  HZU75_RS05770 (HZU75_05770) - 1240203..1240940 (-) 738 WP_180308206.1 pteridine reductase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50362.88 Da        Isoelectric Point: 5.9303

>NTDB_id=466131 HZU75_RS05745 WP_180308201.1 1234725..1236101(-) (pilR) [Chitinibacter fontanus strain STM-7]
MAKKSKVLPRVLVVDDETDLADLLELTLLKMGLDVVKANSVTVAKKQLDAQRFDLCLSDMRMTDGEGLELVQHIQTHRLD
VPIAILTAYGSTNNAIAALKAGAFDYLAKPVSLEQLRTLVKSALKLEQTSEPASNSVAAGSQLLGSSPALLHVLGLVDKL
ARNLAPVYITGESGSGKERAARLIHAKSARGDKPFIAVNCGAIPENLMESEFFGYRKGAFTGATEDRDGFFQAADGGTLF
LDEVADLPLPMQVKLLRAIQERKVRQVGGVSEVDVDVRIISATHQSLAKCVEEGRFRQDLYYRLNVIELKMPPLREMGED
VLLIAQAVLKKIAQRHNMDAPVLQADALQALRRYDFPGNVRELENLLERALALSDGLHIYAEDLHIQQSTADKAEAQAAN
LGDTYPLQDYLDRVEKAAIMAALDKTNFNRTQAAKLLGITFRSMRYRLDRLGICQDED

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=466131 HZU75_RS05745 WP_180308201.1 1234725..1236101(-) (pilR) [Chitinibacter fontanus strain STM-7]
ATGGCCAAAAAATCTAAAGTATTGCCACGCGTATTGGTGGTCGATGATGAAACTGACTTGGCCGATTTGCTTGAACTTAC
CCTATTAAAAATGGGGTTGGATGTGGTTAAAGCCAATAGTGTTACCGTCGCCAAGAAGCAACTGGATGCGCAACGTTTTG
ATCTTTGCCTCTCTGATATGCGCATGACTGATGGCGAAGGTCTGGAACTGGTACAGCATATTCAAACTCATCGACTAGAT
GTGCCCATTGCGATCTTAACGGCCTATGGCAGTACCAATAATGCGATTGCTGCGCTTAAAGCGGGCGCCTTTGATTATCT
GGCCAAGCCCGTTTCATTAGAGCAATTGCGTACTCTGGTGAAATCAGCGCTCAAACTCGAGCAGACCAGTGAGCCGGCTA
GTAATTCGGTGGCTGCTGGCAGTCAATTACTGGGCTCATCACCTGCATTGCTGCATGTGCTGGGATTAGTGGATAAATTA
GCGCGCAATCTGGCGCCTGTGTATATCACTGGTGAGTCGGGTTCGGGTAAAGAGCGTGCTGCACGGTTGATCCACGCCAA
ATCTGCACGTGGAGATAAACCATTTATTGCCGTGAACTGCGGTGCGATCCCAGAAAACTTAATGGAAAGCGAGTTCTTTG
GCTATCGTAAAGGCGCGTTCACCGGCGCAACTGAAGACCGCGATGGTTTTTTTCAGGCCGCAGATGGTGGCACTTTGTTT
TTGGATGAAGTTGCCGATTTACCGTTGCCCATGCAGGTGAAATTGCTGCGCGCCATTCAGGAACGCAAAGTGCGGCAAGT
GGGGGGCGTGAGCGAGGTTGATGTGGATGTGCGGATTATCTCGGCCACCCATCAGAGCCTGGCTAAATGCGTTGAAGAAG
GGCGTTTCCGGCAGGATTTGTATTACCGCCTCAATGTCATCGAGCTCAAAATGCCACCTCTGCGAGAAATGGGCGAGGAT
GTTTTGTTGATTGCGCAAGCTGTGCTCAAAAAAATCGCGCAACGGCACAATATGGATGCGCCTGTTTTACAGGCGGACGC
TTTGCAAGCCCTGCGGCGCTATGATTTTCCGGGCAATGTCCGTGAATTAGAAAACCTGCTCGAGCGCGCGCTTGCTTTAT
CTGATGGCCTGCATATTTATGCCGAAGACTTGCATATCCAGCAGTCGACTGCGGACAAGGCCGAGGCGCAAGCCGCCAAT
CTGGGGGATACTTATCCGCTGCAGGATTATCTGGATCGGGTGGAAAAAGCCGCCATTATGGCCGCGCTGGATAAAACCAA
CTTCAATCGCACTCAAGCTGCCAAATTATTAGGCATTACATTCCGCAGCATGCGTTATCGTCTAGATCGGCTAGGAATTT
GTCAGGATGAGGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Response regulator receiver domain (Response_reg)

(11-120)

Bacterial regulatory protein, Fis family (HTH_8)

(411-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D5ZIH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.306

96.943

0.546
  pilR Acinetobacter baumannii strain A118

46.522

100

0.467
  luxO Vibrio cholerae strain A1552

38.202

97.162

0.371