Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HZ310_RS19430 Genome accession   NZ_CP058951
Coordinates   3780076..3780621 (+) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3775076..3785621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS19405 (HZ310_19405) - 3776077..3776487 (-) 411 WP_044139037.1 hypothetical protein -
  HZ310_RS19410 (HZ310_19410) - 3776503..3777822 (-) 1320 WP_180309743.1 hydrolase -
  HZ310_RS19415 (HZ310_19415) - 3778117..3778323 (+) 207 WP_012011910.1 DUF951 domain-containing protein -
  HZ310_RS19420 (HZ310_19420) ychF 3778540..3779640 (+) 1101 WP_061410195.1 redox-regulated ATPase YchF -
  HZ310_RS19425 (HZ310_19425) rpsF 3779749..3780039 (+) 291 WP_180309744.1 30S ribosomal protein S6 -
  HZ310_RS19430 (HZ310_19430) ssbA 3780076..3780621 (+) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  HZ310_RS19435 (HZ310_19435) rpsR 3780666..3780905 (+) 240 WP_008347556.1 30S ribosomal protein S18 -
  HZ310_RS19440 (HZ310_19440) - 3781116..3782081 (+) 966 WP_180309745.1 ABC transporter ATP-binding protein -
  HZ310_RS19445 (HZ310_19445) opuFB 3782074..3783591 (+) 1518 WP_180309746.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  HZ310_RS19450 (HZ310_19450) - 3783783..3784754 (+) 972 WP_180309747.1 ring-cleaving dioxygenase -
  HZ310_RS19455 (HZ310_19455) - 3784751..3785359 (+) 609 WP_180309748.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=466122 HZ310_RS19430 WP_003215157.1 3780076..3780621(+) (ssbA) [Bacillus pumilus strain UAMX]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=466122 HZ310_RS19430 WP_003215157.1 3780076..3780621(+) (ssbA) [Bacillus pumilus strain UAMX]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGTAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGACGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376