Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HZ310_RS03935 Genome accession   NZ_CP058951
Coordinates   789902..790543 (+) Length   213 a.a.
NCBI ID   WP_058013793.1    Uniprot ID   A0A2G8IV23
Organism   Bacillus pumilus strain UAMX     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 784902..795543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS03910 (HZ310_03910) - 785223..785576 (-) 354 WP_034620108.1 hypothetical protein -
  HZ310_RS03915 (HZ310_03915) degQ 786082..786222 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  HZ310_RS03920 (HZ310_03920) - 786374..787288 (+) 915 WP_180310169.1 polyprenyl synthetase family protein -
  HZ310_RS03925 (HZ310_03925) comX 787285..787455 (+) 171 WP_098677614.1 competence pheromone ComX -
  HZ310_RS03930 (HZ310_03930) comP 787509..789821 (+) 2313 WP_180310170.1 ATP-binding protein Regulator
  HZ310_RS03935 (HZ310_03935) comA 789902..790543 (+) 642 WP_058013793.1 response regulator transcription factor Regulator
  HZ310_RS03940 (HZ310_03940) - 790567..790956 (+) 390 WP_003213775.1 hotdog fold thioesterase -
  HZ310_RS03945 (HZ310_03945) mnhG 791044..791418 (-) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  HZ310_RS03950 (HZ310_03950) - 791402..791683 (-) 282 WP_012011105.1 Na(+)/H(+) antiporter subunit F1 -
  HZ310_RS03955 (HZ310_03955) - 791683..792162 (-) 480 WP_058013794.1 Na+/H+ antiporter subunit E -
  HZ310_RS03960 (HZ310_03960) - 792169..793647 (-) 1479 WP_058013795.1 Na+/H+ antiporter subunit D -
  HZ310_RS03965 (HZ310_03965) - 793640..793981 (-) 342 WP_058013796.1 Na(+)/H(+) antiporter subunit C -
  HZ310_RS03970 (HZ310_03970) - 793981..794412 (-) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24154.55 Da        Isoelectric Point: 4.5688

>NTDB_id=466076 HZ310_RS03935 WP_058013793.1 789902..790543(+) (comA) [Bacillus pumilus strain UAMX]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=466076 HZ310_RS03935 WP_058013793.1 789902..790543(+) (comA) [Bacillus pumilus strain UAMX]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAACAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGGATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATCTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTGAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCAATTGAATACAG
CTTGACGTCTATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGTTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IV23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718