Detailed information NTG0465944

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HU825_RS18200
• Genome accession: NZ_CP058908
• Coordinates: 3812476..3814698 (-)
• Length: 740 a.a.
• NCBI ID: WP_234302615.1
• Uniprot ID: -
• Organism: Pseudomonas phenolilytica strain RBPA9
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3807476..3819698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU825_RS18165 (HU825_18130)	murB	3807867..3808886 (-)	1020	WP_234302610.1	UDP-N-acetylmuramate dehydrogenase	-
HU825_RS18170 (HU825_18135)	-	3808883..3809347 (-)	465	WP_234302611.1	low molecular weight protein-tyrosine-phosphatase	-
HU825_RS18175 (HU825_18140)	kdsB	3809350..3810114 (-)	765	WP_234302612.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HU825_RS18180 (HU825_18145)	-	3810111..3810296 (-)	186	WP_008570668.1	Trm112 family protein	-
HU825_RS18185 (HU825_18150)	lpxK	3810343..3811347 (-)	1005	WP_234302613.1	tetraacyldisaccharide 4'-kinase	-
HU825_RS18190 (HU825_18155)	-	3811347..3811775 (-)	429	WP_234302614.1	biopolymer transporter ExbD	-
HU825_RS18195 (HU825_18160)	exbB	3811772..3812404 (-)	633	WP_043299365.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HU825_RS18200 (HU825_18165)	comA	3812476..3814698 (-)	2223	WP_234302615.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HU825_RS18205 (HU825_18170)	-	3814849..3815364 (+)	516	WP_043299361.1	DUF2062 domain-containing protein	-
HU825_RS18210 (HU825_18175)	-	3815374..3816618 (-)	1245	WP_234302616.1	lipoprotein-releasing ABC transporter permease subunit	-
HU825_RS18215 (HU825_18180)	lolD	3816618..3817316 (-)	699	WP_234303424.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
HU825_RS18220 (HU825_18185)	-	3817324..3818571 (-)	1248	WP_043299355.1	lipoprotein-releasing ABC transporter permease subunit	-
HU825_RS18225 (HU825_18190)	-	3818670..3819242 (+)	573	WP_054095090.1	PilZ domain-containing protein	-
HU825_RS18230 (HU825_18195)	-	3819247..3819549 (+)	303	WP_234302617.1	phosphodiesterase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 80518.48 Da
• Isoelectric Point: 9.7654

>NTDB_id=465944 HU825_RS18200 WP_234302615.1 3812476..3814698(-) (comA) [Pseudomonas phenolilytica strain RBPA9]
MRAGMLALAMGLLLPRFLPELPAAWALIVLGMLGLLCLLRPASRPLAWLCFGLLWASLQMQAALDGRLASELDGRTFWLE
GQVLGLPAAQDGVVRFELGDIRSRHAGLPPRLRLAWYGGPQLRAGERWRLAARLKRPHGLVNPHSFDHEAWLLAHHIGAT
GTVKTGERLREAVGAGSWRDRLRARLLAVEAQGRQGAIAALVVGDSSGLSPTDWRILQDTGTVHLMVISGQHVGMLAGLL
YGLVALLARIGWWPRHLPWLPCACTAAFAGALGYGWLAGFEVPVQRACVMVAVVLLWRLCFRQLGVWLPLLIALDGVLLF
DPLASLQPGFWLSFGAVALLALTFSGRLGAWRWWLTLPRVQWAMVVGLLPLMLALGLPISASGPLANLLAVPWVGLTVPV
ALLGTALLPLSGLGEGLLLLAGWSLGWLFQLLELFADWQAAWIVESLPLWAWSLATVGALMLLLPAGVPFRALGALLLLP
LLYPSTPLPLAGKADVWVFDVGQGLSVLVRTRSHALLYDAGPRHGDFDTGERIVFPSLRRLGVDRLDVLLISHADSDHAG
GAVAVQRLLPTQRVLGGEPARLPAVLQAQSCESQTWRWDGVRFGLWRWAQAADGNQSSCVLMIEAGGERLLLTGDIDARA
EQALVQSDWPLAAHWLLLPHHGSNSSSSLPFLSAVRPQNALISRGRHNAFGHPHPMVIGRLQDVGVRLYDTAESGALKVE
LGAFHEARGLREQRRFWREK

Nucleotide

• Length: 2223 bp

>NTDB_id=465944 HU825_RS18200 WP_234302615.1 3812476..3814698(-) (comA) [Pseudomonas phenolilytica strain RBPA9]
ATGCGGGCAGGGATGCTGGCATTGGCCATGGGTTTGTTGTTGCCGCGCTTTCTGCCGGAGTTGCCAGCGGCCTGGGCATT
GATTGTGCTGGGCATGTTGGGGCTGCTGTGCCTGTTGCGACCAGCATCCCGGCCGCTGGCCTGGTTGTGTTTCGGCCTGC
TCTGGGCGTCTCTGCAGATGCAGGCGGCGCTGGACGGGCGGCTCGCCAGCGAACTCGACGGTCGCACGTTCTGGCTCGAA
GGTCAGGTGCTCGGGCTGCCGGCCGCGCAGGACGGTGTGGTGCGCTTCGAACTCGGCGACATCCGCTCGCGGCACGCCGG
CTTGCCGCCGCGCCTGCGCCTGGCTTGGTATGGCGGTCCGCAGCTGCGCGCCGGTGAGCGTTGGCGGCTGGCAGCGCGGC
TGAAACGCCCGCACGGACTGGTTAACCCGCATTCGTTCGATCATGAGGCCTGGCTGCTAGCGCACCACATCGGCGCGACC
GGAACGGTCAAAACCGGCGAGCGTCTGCGGGAAGCGGTTGGTGCCGGTAGCTGGCGCGATCGCTTGCGTGCCCGATTGTT
GGCTGTCGAGGCGCAGGGCCGGCAGGGCGCGATCGCGGCGCTGGTGGTCGGCGATAGCTCGGGCCTGTCACCAACGGATT
GGCGCATCCTGCAGGACACCGGGACGGTGCACCTGATGGTCATCTCCGGCCAGCATGTAGGCATGCTGGCCGGCCTGCTG
TACGGGCTGGTGGCGCTGTTGGCGCGCATCGGTTGGTGGCCGCGACATCTGCCGTGGCTGCCCTGCGCCTGTACGGCGGC
CTTCGCTGGCGCCCTCGGTTACGGCTGGCTGGCCGGGTTCGAGGTGCCGGTCCAGCGGGCCTGCGTGATGGTGGCAGTGG
TGCTGCTCTGGCGTCTGTGCTTTCGTCAGCTGGGTGTCTGGCTACCGCTGCTGATCGCGCTCGACGGTGTCCTGTTGTTC
GATCCGCTGGCCAGTCTGCAGCCGGGGTTCTGGTTGTCCTTCGGCGCCGTCGCCTTGCTCGCCTTGACGTTCTCCGGACG
ACTGGGCGCCTGGCGCTGGTGGCTGACTCTACCGCGTGTGCAGTGGGCGATGGTGGTGGGCTTGCTGCCCTTGATGCTGG
CGTTGGGGCTGCCGATCAGCGCCAGCGGGCCCTTGGCGAATCTACTGGCAGTGCCCTGGGTTGGTCTGACGGTGCCGGTG
GCGCTGCTCGGCACCGCGCTGCTGCCGTTGTCAGGCCTTGGCGAAGGTCTGCTGCTACTGGCGGGCTGGTCGCTGGGATG
GCTGTTCCAGTTGCTGGAGCTGTTCGCGGACTGGCAGGCAGCCTGGATAGTGGAGAGCCTGCCGCTCTGGGCCTGGTCGC
TGGCGACGGTGGGCGCGCTGATGTTGCTGCTGCCCGCCGGCGTGCCGTTCCGTGCGCTGGGGGCGCTGCTCCTGCTGCCA
CTGCTGTATCCGTCGACGCCGCTGCCGCTTGCCGGCAAAGCCGACGTCTGGGTGTTCGATGTTGGGCAAGGCCTCTCGGT
GCTGGTGCGCACCCGCTCCCATGCCTTGCTTTACGATGCCGGCCCACGCCACGGTGACTTCGACACGGGCGAGCGAATCG
TCTTCCCGTCGCTGCGGCGGCTGGGAGTGGATCGGCTGGACGTGCTGCTGATCAGTCATGCCGACAGCGATCATGCCGGC
GGCGCGGTGGCCGTGCAGCGACTGCTGCCGACGCAGCGAGTGCTCGGCGGCGAACCGGCGCGACTGCCGGCGGTGCTGCA
GGCGCAATCCTGCGAGAGTCAGACCTGGCGGTGGGACGGCGTGCGCTTCGGCCTCTGGCGCTGGGCGCAGGCGGCGGATG
GCAACCAGTCGTCCTGCGTGCTGATGATCGAGGCGGGAGGCGAGCGCCTGCTACTGACCGGCGATATCGATGCGCGGGCG
GAACAGGCGCTGGTGCAGAGTGACTGGCCGCTGGCGGCGCACTGGCTGCTGTTACCGCATCACGGCAGCAACAGTTCCTC
TTCGCTGCCTTTTCTTTCGGCGGTACGGCCGCAGAATGCGCTGATCTCACGCGGCCGCCACAATGCGTTTGGTCATCCTC
ATCCGATGGTCATCGGACGCTTGCAAGACGTAGGCGTGCGGCTGTACGACACTGCCGAGTCAGGCGCGCTGAAGGTTGAA
CTGGGGGCGTTTCACGAAGCGCGTGGTTTGCGCGAGCAGCGCCGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (201-464)

• Domain of unknown function (DUF4131) (DUF4131) (23-168)

• Metallo-beta-lactamase superfamily (Lactamase_B) (501-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	69.553	96.757	0.673
comA	Ralstonia pseudosolanacearum GMI1000	38.739	100	0.407