Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HU825_RS18195 Genome accession   NZ_CP058908
Coordinates   3811772..3812404 (-) Length   210 a.a.
NCBI ID   WP_043299365.1    Uniprot ID   -
Organism   Pseudomonas phenolilytica strain RBPA9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3806772..3817404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU825_RS18165 (HU825_18130) murB 3807867..3808886 (-) 1020 WP_234302610.1 UDP-N-acetylmuramate dehydrogenase -
  HU825_RS18170 (HU825_18135) - 3808883..3809347 (-) 465 WP_234302611.1 low molecular weight protein-tyrosine-phosphatase -
  HU825_RS18175 (HU825_18140) kdsB 3809350..3810114 (-) 765 WP_234302612.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU825_RS18180 (HU825_18145) - 3810111..3810296 (-) 186 WP_008570668.1 Trm112 family protein -
  HU825_RS18185 (HU825_18150) lpxK 3810343..3811347 (-) 1005 WP_234302613.1 tetraacyldisaccharide 4'-kinase -
  HU825_RS18190 (HU825_18155) - 3811347..3811775 (-) 429 WP_234302614.1 biopolymer transporter ExbD -
  HU825_RS18195 (HU825_18160) exbB 3811772..3812404 (-) 633 WP_043299365.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU825_RS18200 (HU825_18165) comA 3812476..3814698 (-) 2223 WP_234302615.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HU825_RS18205 (HU825_18170) - 3814849..3815364 (+) 516 WP_043299361.1 DUF2062 domain-containing protein -
  HU825_RS18210 (HU825_18175) - 3815374..3816618 (-) 1245 WP_234302616.1 lipoprotein-releasing ABC transporter permease subunit -
  HU825_RS18215 (HU825_18180) lolD 3816618..3817316 (-) 699 WP_234303424.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22821.10 Da        Isoelectric Point: 7.8874

>NTDB_id=465943 HU825_RS18195 WP_043299365.1 3811772..3812404(-) (exbB) [Pseudomonas phenolilytica strain RBPA9]
MWELVKAGGWIMLPIILCSIVAAAIIAERLWTLRPSRVTPPHLLGQVWKWIKEKKLSNQRLKELRADSPLGEILAAGLAN
SKRGREIMKECIEEAAARVVHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSAFMGSGMANAPQLAGGIAKALITTAA
GLIVAIPALFFHRFLLRRVDELVVGMEQEAIKLVEVVQGDRDVDLDEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=465943 HU825_RS18195 WP_043299365.1 3811772..3812404(-) (exbB) [Pseudomonas phenolilytica strain RBPA9]
GTGTGGGAGCTGGTCAAAGCGGGCGGCTGGATAATGCTGCCGATCATTCTGTGTTCAATCGTCGCCGCCGCGATCATTGC
CGAGCGGCTGTGGACGCTGCGTCCAAGCCGGGTCACGCCACCGCATCTGCTCGGTCAGGTGTGGAAGTGGATCAAGGAAA
AGAAGCTCAGCAACCAACGGCTCAAGGAGCTGCGCGCCGATTCGCCGCTGGGCGAGATTCTCGCCGCCGGGCTGGCCAAT
TCCAAACGCGGCCGCGAGATCATGAAAGAATGCATTGAGGAAGCCGCGGCCCGTGTCGTGCATGACCTGGAGCGCTATCT
CAATGCGCTGGGAACGATTGCCGGCATCGCGCCATTGCTCGGTCTGCTGGGTACCGTGCTGGGTATGATCGAGATCTTCA
GCGCCTTCATGGGGTCGGGCATGGCCAATGCGCCGCAACTCGCCGGCGGGATCGCCAAGGCGCTGATCACTACCGCGGCG
GGCCTTATCGTGGCGATTCCGGCACTGTTTTTCCATCGCTTCCTGTTGCGTCGCGTCGATGAGCTGGTGGTCGGCATGGA
GCAGGAGGCTATCAAGCTGGTCGAGGTGGTCCAGGGCGACCGCGATGTCGATCTGGACGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

94.286

100

0.943