Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   JQ464_RS09555 Genome accession   NZ_CP069332
Coordinates   2069825..2070496 (+) Length   223 a.a.
NCBI ID   WP_124124996.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain R08     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2064825..2075496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ464_RS09535 (JQ464_09525) - 2065271..2066788 (-) 1518 WP_124117711.1 tripartite tricarboxylate transporter permease -
  JQ464_RS09540 (JQ464_09530) - 2066799..2067269 (-) 471 WP_010793853.1 tripartite tricarboxylate transporter TctB family protein -
  JQ464_RS09545 (JQ464_09535) - 2067318..2068301 (-) 984 WP_004348207.1 tripartite tricarboxylate transporter substrate binding protein -
  JQ464_RS09550 (JQ464_09540) - 2068331..2069614 (-) 1284 WP_003101939.1 OprD family porin -
  JQ464_RS09555 (JQ464_09545) ciaR 2069825..2070496 (+) 672 WP_124124996.1 response regulator Regulator
  JQ464_RS09560 (JQ464_09550) - 2070489..2071871 (+) 1383 WP_010793854.1 sensor histidine kinase -
  JQ464_RS09565 (JQ464_09555) - 2071880..2072716 (-) 837 WP_003085528.1 HDOD domain-containing protein -
  JQ464_RS09570 (JQ464_09560) - 2072817..2073761 (-) 945 WP_003114180.1 folate-binding protein YgfZ -
  JQ464_RS09575 (JQ464_09565) - 2074034..2074288 (+) 255 WP_003085532.1 succinate dehydrogenase assembly factor 2 -
  JQ464_RS09580 (JQ464_09570) - 2074272..2074724 (+) 453 WP_003114181.1 protein YgfX -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24449.27 Da        Isoelectric Point: 5.1881

>NTDB_id=465729 JQ464_RS09555 WP_124124996.1 2069825..2070496(+) (ciaR) [Pseudomonas aeruginosa strain R08]
MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGFEVLARLRGRGKTLPVLMLTA
RGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGEQLQRCGAMVYDLGTRRFSLDEQPLTLTSREQAVLEA
MIARPGRVMSKEQLAAQVFGLDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLLEAQGD

Nucleotide


Download         Length: 672 bp        

>NTDB_id=465729 JQ464_RS09555 WP_124124996.1 2069825..2070496(+) (ciaR) [Pseudomonas aeruginosa strain R08]
ATGCGCATCCTTCTGGTGGAAGATCATCCGCAGCTCGCCGAAAGCGTGGTCCAGGCGCTCAAGGGCGCCGGCTGGACGGT
AGACCTGCTGCAGGACGGGGTGGCCGCCGACCTGGCCCTGGCCAGCGAGGAGTACGCCCTGGCGATCCTCGACGTCGGCC
TGCCGCGGATGGACGGCTTCGAGGTGCTGGCGCGCCTGCGCGGGCGCGGCAAGACCCTGCCGGTGCTGATGCTGACTGCG
CGCGGCGAGGTGAAGGACCGGGTGCACGGCCTCAATCTCGGCGCCGACGACTACCTGGCAAAGCCTTTCGAACTGTCCGA
GCTGGAGGCGCGGGTCAAGGCCCTGCTGCGCCGCAGCGTGCTCGGTGGCGAACAGTTGCAGCGCTGCGGCGCCATGGTCT
ACGACCTCGGCACCCGGCGCTTCAGCCTCGACGAGCAGCCGCTGACCCTGACCTCGCGGGAACAGGCGGTGCTGGAAGCG
ATGATCGCCCGTCCGGGGCGGGTGATGAGCAAGGAGCAACTGGCCGCCCAGGTCTTCGGCCTGGACGAGGAGGCCAGCGC
CGACGCCATCGAGATCTACGTCCACCGCCTGCGCAAGAAGCTGGAAGGCGGCGCCGTGCGCATCGTCACCTTCCGCGGCC
TCGGCTACCTGCTGGAGGCGCAGGGTGACTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-218)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

37.668

100

0.377
  ciaR Streptococcus pneumoniae D39

37.668

100

0.377
  ciaR Streptococcus pneumoniae R6

37.668

100

0.377
  ciaR Streptococcus pneumoniae TIGR4

37.668

100

0.377
  covR Lactococcus lactis subsp. lactis strain DGCC12653

37.22

100

0.372