Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   SSU1300283_RS10560 Genome accession   NZ_CP058741
Coordinates   2154189..2154455 (-) Length   88 a.a.
NCBI ID   WP_002939335.1    Uniprot ID   A0A126UJ45
Organism   Streptococcus suis strain 13-00283-02     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2149189..2159455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS10520 (SSU1300283_02134) rpsC 2149511..2150164 (-) 654 WP_002936661.1 30S ribosomal protein S3 -
  SSU1300283_RS10525 (SSU1300283_02135) rplV 2150177..2150521 (-) 345 WP_002936662.1 50S ribosomal protein L22 -
  SSU1300283_RS10530 (SSU1300283_02136) rpsS 2150539..2150820 (-) 282 WP_000533766.1 30S ribosomal protein S19 -
  SSU1300283_RS10535 (SSU1300283_02137) rplB 2150922..2151755 (-) 834 WP_002936663.1 50S ribosomal protein L2 -
  SSU1300283_RS10540 (SSU1300283_02138) - 2151773..2152072 (-) 300 WP_004195491.1 50S ribosomal protein L23 -
  SSU1300283_RS10545 (SSU1300283_02139) rplD 2152072..2152695 (-) 624 WP_004195490.1 50S ribosomal protein L4 -
  SSU1300283_RS10550 (SSU1300283_02140) rplC 2152720..2153346 (-) 627 WP_011921686.1 50S ribosomal protein L3 -
  SSU1300283_RS10555 (SSU1300283_02141) rpsJ 2153559..2153867 (-) 309 WP_014636748.1 30S ribosomal protein S10 -
  SSU1300283_RS10560 (SSU1300283_02142) comX/sigX 2154189..2154455 (-) 267 WP_002939335.1 hypothetical protein Regulator
  SSU1300283_RS10565 (SSU1300283_02143) - 2154528..2155106 (-) 579 WP_044667815.1 nucleotidyltransferase family protein -
  SSU1300283_RS10570 (SSU1300283_02144) - 2155364..2155684 (-) 321 WP_002939343.1 DUF1292 domain-containing protein -
  SSU1300283_RS10575 (SSU1300283_02145) ruvX 2155696..2156115 (-) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  SSU1300283_RS10580 (SSU1300283_02146) - 2156115..2156381 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  SSU1300283_RS10585 (SSU1300283_02147) spx 2156481..2156879 (-) 399 WP_002939362.1 transcriptional regulator Spx -
  SSU1300283_RS10590 (SSU1300283_02148) recA 2157115..2158266 (-) 1152 WP_011922545.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10717.52 Da        Isoelectric Point: 9.1949

>NTDB_id=465218 SSU1300283_RS10560 WP_002939335.1 2154189..2154455(-) (comX/sigX) [Streptococcus suis strain 13-00283-02]
MEFETVCLKVRNLGRLYCYFKVKFRNHIEAIIRKQESQKCKFDRLFHEDIHSLIQSPSLGNDELLMLWGLLRDYRKNLIN
DRLENMKN

Nucleotide


Download         Length: 267 bp        

>NTDB_id=465218 SSU1300283_RS10560 WP_002939335.1 2154189..2154455(-) (comX/sigX) [Streptococcus suis strain 13-00283-02]
ATGGAATTTGAAACGGTTTGTTTGAAGGTTAGAAACTTAGGTAGGCTATATTGCTACTTCAAAGTTAAATTTAGAAACCA
TATCGAGGCTATAATTCGTAAACAGGAAAGTCAAAAATGTAAATTTGATCGTCTCTTCCATGAAGATATTCATAGTTTGA
TTCAATCACCGAGCTTGGGTAATGATGAGTTGCTGATGTTATGGGGTCTCCTGAGAGATTATCGAAAAAATTTAATCAAT
GACCGACTTGAAAATATGAAAAATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126UJ45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

73.973

82.955

0.614
  comX/sigX Streptococcus suis isolate S10

72.603

82.955

0.602
  comX/sigX Streptococcus suis P1/7

72.603

82.955

0.602
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

39.506

92.045

0.364
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

39.506

92.045

0.364