Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   SSU16085_RS04180 Genome accession   NZ_CP058740
Coordinates   881205..882554 (+) Length   449 a.a.
NCBI ID   WP_009910235.1    Uniprot ID   A0A0Z8DHB7
Organism   Streptococcus suis strain 16085/3b     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 876205..887554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS04155 (SSU16085_00846) - 877316..877975 (-) 660 WP_009910247.1 amino acid ABC transporter permease -
  SSU16085_RS04160 (SSU16085_00847) - 877990..878688 (-) 699 WP_013730248.1 amino acid ABC transporter permease -
  SSU16085_RS04165 (SSU16085_00848) - 878703..879542 (-) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  SSU16085_RS04170 (SSU16085_00849) - 879553..880314 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  SSU16085_RS04175 (SSU16085_00850) micA 880508..881212 (+) 705 WP_004298854.1 response regulator YycF Regulator
  SSU16085_RS04180 (SSU16085_00851) micB 881205..882554 (+) 1350 WP_009910235.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SSU16085_RS04185 (SSU16085_00852) vicX 882561..883364 (+) 804 WP_009910233.1 MBL fold metallo-hydrolase Regulator
  SSU16085_RS04190 (SSU16085_00854) - 883925..884374 (+) 450 WP_043032937.1 ATP-binding cassette domain-containing protein -
  SSU16085_RS04195 (SSU16085_00855) pbp2b 884466..886541 (+) 2076 WP_043032936.1 penicillin-binding protein PBP2B -
  SSU16085_RS04200 (SSU16085_00856) recR 886550..887146 (+) 597 WP_002935848.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51099.13 Da        Isoelectric Point: 4.5202

>NTDB_id=465147 SSU16085_RS04180 WP_009910235.1 881205..882554(+) (micB) [Streptococcus suis strain 16085/3b]
MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQLNQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSE
VIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSSQKQEQYHLLEVLDLSDRYTLRDLLAQTPE
IVIDHTNENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNTDSDKVYTIVRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKTDLPRIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=465147 SSU16085_RS04180 WP_009910235.1 881205..882554(+) (micB) [Streptococcus suis strain 16085/3b]
ATGATTAATCAATTACGTTATTTAATGACCACGGCAGAATTTTGGTTTGTTGTCATTTTGATTGGCTTTCTAATTGCTCT
GACGGTCCTTTTGATTGAAAACTATCGGGATAATAAGCAAATTAAACAACTCAATCAAAAAGTCAATGCCTTAATTGAGG
GGAATTATGCAGATGTGTTAGACATGAGGGGAAGTCCTGAAATAACAGATATGGCGAATTCTCTTAATGATCTGTCCGAA
GTCATCCGCTTAACTCATGATAATTTAGAACAAGAAAAGACGCGTCTGACTTCCATCCTGTCCTATATGAGTGACGGTGT
TATTGCTACAGACCGTATCGGACGGATCATCATGATTAACGATATGGCCCAGAAACAGTTGGGGCTTTCTAGCCAAAAGC
AGGAGCAGTATCACCTGCTCGAGGTTTTAGATTTATCAGACCGTTATACATTGAGAGATTTGTTGGCTCAGACACCTGAG
ATTGTGATTGATCACACCAATGAAAACGAAGAATTTTTGACTTTACGTGCTAATTTTGCCACGATTCGTAGTGAGAGTGG
CCTGATTTCTGGCTTGGTAGTCGTCTTGCATGATATGACCGAGCAGGCCAAGGAAGAACGGGAACGTAGGCTGTTTGTGT
CAAATGTGAGTCATGAATTGCGTACGCCATTGACTTCCGTTAAATCCTATCTAGAGGCTCTGGATGAGGGGGCGCTGACG
GAGTCTGTTGCACCGAGTTTTGTTAAGGTATCCTTAGATGAGACCAACCGCATGATGCGGATGATTACAGACCTCCTAAG
CTTATCGCGTATTGATAATCAAGTTGGTCAGATAGATGTTGAACTGATAAACTTTACTGCTTTTGTGACCTTTATTCTTA
ACCGTTTTGACCAAATGAAAAATACTGATTCTGATAAGGTCTATACGATTGTTCGTGACTATCAAATCAGTCCTATTTGG
GTTGAGATTGATACAGATAAGATGACTCAGGTTTTAGATAATATCTTAAATAATGCCATTAAATATTCGCCAGATGGCGG
GACAATTACCTTCAGCATGAAGACCACAGATAGCCAGTTGATTGTATCCGTATCAGACGAAGGTCTGGGGATTCCGAAAA
CAGATTTACCTAGAATTTTTGACCGATTTTATCGCGTAGACAAGGCACGATCTCGTGCCCAAGGCGGTACAGGTCTTGGT
TTAGCTATTGCAAAAGAAATCGTGAAACAACATAAGGGCTTTATCTGGGCTAAAAGCGAATATGGTCATGGCTCAACGTT
TACAATTGTCTTGCCGTACAGCAAGGACATCGCACTGGATGAGTGGGATGATTCAGATGAGGAAGAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

PAS fold (PAS)

(96-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8DHB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

70.183

97.105

0.682
  vicK Streptococcus mutans UA159

70.72

89.755

0.635