Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SSU16085_RS04185 Genome accession   NZ_CP058740
Coordinates   882561..883364 (+) Length   267 a.a.
NCBI ID   WP_009910233.1    Uniprot ID   A0A123TMP5
Organism   Streptococcus suis strain 16085/3b     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 877561..888364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS04160 (SSU16085_00847) - 877990..878688 (-) 699 WP_013730248.1 amino acid ABC transporter permease -
  SSU16085_RS04165 (SSU16085_00848) - 878703..879542 (-) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  SSU16085_RS04170 (SSU16085_00849) - 879553..880314 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  SSU16085_RS04175 (SSU16085_00850) micA 880508..881212 (+) 705 WP_004298854.1 response regulator YycF Regulator
  SSU16085_RS04180 (SSU16085_00851) micB 881205..882554 (+) 1350 WP_009910235.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SSU16085_RS04185 (SSU16085_00852) vicX 882561..883364 (+) 804 WP_009910233.1 MBL fold metallo-hydrolase Regulator
  SSU16085_RS04190 (SSU16085_00854) - 883925..884374 (+) 450 WP_043032937.1 ATP-binding cassette domain-containing protein -
  SSU16085_RS04195 (SSU16085_00855) pbp2b 884466..886541 (+) 2076 WP_043032936.1 penicillin-binding protein PBP2B -
  SSU16085_RS04200 (SSU16085_00856) recR 886550..887146 (+) 597 WP_002935848.1 recombination mediator RecR -
  SSU16085_RS04205 (SSU16085_00857) - 887251..888297 (+) 1047 WP_002935850.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29645.73 Da        Isoelectric Point: 5.7755

>NTDB_id=465148 SSU16085_RS04185 WP_009910233.1 882561..883364(+) (vicX) [Streptococcus suis strain 16085/3b]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKVTSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=465148 SSU16085_RS04185 WP_009910233.1 882561..883364(+) (vicX) [Streptococcus suis strain 16085/3b]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATTTTAGTGGATGCTGGCTTATCAGGGAAAAAGGTTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGTGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
GCTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A123TMP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768