Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HYO64_RS15545 Genome accession   NZ_CP058729
Coordinates   3237655..3238065 (-) Length   136 a.a.
NCBI ID   WP_114155399.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3232655..3243065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS15515 - 3232741..3233010 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  HYO64_RS15520 rapZ 3233007..3233858 (-) 852 WP_000821671.1 RNase adapter RapZ -
  HYO64_RS15525 panC 3233881..3234729 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  HYO64_RS15530 panB 3234733..3235542 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HYO64_RS15535 folK 3235588..3236070 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  HYO64_RS15540 pcnB 3236067..3237530 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  HYO64_RS15545 comEA 3237655..3238065 (-) 411 WP_114155399.1 ComEA family DNA-binding protein Machinery gene
  HYO64_RS15550 mazG 3238034..3238840 (-) 807 WP_114155397.1 nucleoside triphosphate pyrophosphohydrolase -
  HYO64_RS15555 - 3238952..3239725 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  HYO64_RS15560 - 3239770..3242076 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15701.96 Da        Isoelectric Point: 10.2846

>NTDB_id=465074 HYO64_RS15545 WP_114155399.1 3237655..3238065(-) (comEA) [Acinetobacter baumannii strain M164-3]
MQYSMRFWKNKYFILIMLCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ADVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=465074 HYO64_RS15545 WP_114155399.1 3237655..3238065(-) (comEA) [Acinetobacter baumannii strain M164-3]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTATTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGCTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGGATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404