Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   S9968_RS08865 Genome accession   NZ_CP058666
Coordinates   1708437..1709750 (-) Length   437 a.a.
NCBI ID   WP_179862423.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S9968     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703437..1714750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S9968_RS08845 (S9968_101763) - 1704917..1705690 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  S9968_RS08850 (S9968_101764) - 1705680..1706366 (-) 687 WP_000280308.1 SatD family protein -
  S9968_RS08855 (S9968_101765) ffh 1706433..1707998 (-) 1566 WP_000863589.1 signal recognition particle protein -
  S9968_RS08860 (S9968_101766) - 1708016..1708348 (-) 333 WP_000402075.1 putative DNA-binding protein -
  S9968_RS08865 (S9968_101767) ciaH 1708437..1709750 (-) 1314 WP_179862423.1 cell wall metabolism sensor histidine kinase WalK Regulator
  S9968_RS08870 (S9968_101768) ciaR 1709734..1710414 (-) 681 WP_000590620.1 response regulator transcription factor Regulator
  S9968_RS08875 (S9968_101769) - 1710576..1713125 (-) 2550 WP_000859382.1 M1 family metallopeptidase -
  S9968_RS08880 (S9968_101770) phoU 1713271..1713924 (-) 654 WP_000946330.1 phosphate signaling complex protein PhoU -
  S9968_RS08885 (S9968_101771) pstB 1713958..1714716 (-) 759 WP_000193363.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49742.16 Da        Isoelectric Point: 9.4961

>NTDB_id=464850 S9968_RS08865 WP_179862423.1 1708437..1709750(-) (ciaH) [Streptococcus agalactiae strain S9968]
MSKPIKISKFKKNVSDSHFIHFFTVFSGIFLVMTVIILQVMRYGVYSSVDSSLKYISTHPKNYINMVMSRTAAYLDNSNI
ASVKLKPGGQTVANTDIILFTSEEEVINYFDAFSNYQFLKPNKKNLGGISELTLTNIFGQDETYHAVTVKVNNPAYPNVT
YMTAIVNIDQFVNAKERYEKIIIFVMTTFWIISIGASIYLAKWAQKPIIENYERQKAFVENASHELRTPLAVLQNRLETL
FRKPNATILENSENIASSLDEVRNMRILTTNLLNLARRDDGIKPELAVIKPTLFDSIFENYDLITQENGKNFTGHNMIQD
SFKTDKTLLKQLMTILFDNAIKYTDNDGSIDFTISETDKYLFLEIADNGPGISEEDKVRIFDRFYRVDKARTRQQGGFGL
GLSLAQQIVNSLRGNITVIDNKPRGSIFKIKLPKVKG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=464850 S9968_RS08865 WP_179862423.1 1708437..1709750(-) (ciaH) [Streptococcus agalactiae strain S9968]
ATGTCGAAACCGATTAAGATAAGTAAATTCAAAAAAAATGTCTCAGATAGTCATTTTATCCATTTTTTCACAGTTTTTAG
TGGTATTTTTCTGGTTATGACTGTTATCATCCTCCAAGTCATGCGCTATGGTGTTTATTCTTCTGTTGATAGTAGTTTAA
AGTATATCAGTACCCATCCTAAAAATTACATCAATATGGTTATGTCACGTACTGCTGCCTACCTAGATAACTCCAATATC
GCAAGTGTCAAGTTAAAACCCGGCGGTCAGACAGTAGCTAATACTGATATTATTCTTTTTACATCAGAAGAAGAAGTCAT
TAACTATTTTGACGCATTTTCAAACTATCAGTTTTTAAAACCTAATAAAAAAAATCTAGGTGGCATTAGTGAATTAACTT
TAACCAACATCTTTGGTCAAGATGAGACATATCATGCTGTCACCGTAAAAGTTAATAACCCTGCTTATCCTAATGTGACT
TACATGACAGCTATTGTTAATATTGATCAATTCGTAAATGCTAAAGAACGCTATGAAAAAATTATTATATTTGTCATGAC
TACTTTTTGGATTATTTCAATTGGAGCAAGTATCTACTTAGCTAAATGGGCACAAAAACCGATTATAGAAAACTACGAAA
GACAGAAGGCTTTTGTCGAAAATGCTAGCCACGAGCTGCGTACTCCCCTAGCTGTCTTACAAAATCGCCTAGAAACGCTA
TTCAGAAAACCGAATGCCACCATTTTAGAAAATAGTGAAAATATCGCTTCAAGTCTAGATGAAGTACGAAATATGCGTAT
TTTAACCACTAATCTTTTAAACTTAGCAAGACGTGATGATGGAATCAAACCAGAATTAGCTGTTATTAAGCCTACACTTT
TTGATAGTATCTTTGAGAATTATGATCTAATCACCCAAGAGAATGGTAAAAATTTTACTGGACATAATATGATCCAAGAT
AGTTTCAAAACAGATAAGACACTGCTAAAACAACTCATGACTATTTTATTTGATAATGCTATAAAATATACTGACAATGA
TGGTAGCATTGACTTTACCATATCTGAAACTGATAAGTATCTCTTTTTAGAAATCGCTGATAATGGACCAGGAATTTCAG
AGGAGGATAAAGTCAGAATTTTTGATCGTTTTTACCGTGTTGACAAAGCAAGAACACGACAACAAGGAGGGTTTGGCCTC
GGCCTTTCTTTAGCTCAACAAATCGTTAACTCACTGCGAGGTAATATTACAGTAATTGATAATAAACCTAGAGGCAGTAT
TTTTAAGATAAAACTACCAAAAGTAAAAGGTTAG

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(325-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(216-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

59.907

98.169

0.588
  ciaH Streptococcus pneumoniae Rx1

51.544

96.339

0.497
  ciaH Streptococcus pneumoniae D39

51.544

96.339

0.497
  ciaH Streptococcus pneumoniae R6

51.544

96.339

0.497
  ciaH Streptococcus pneumoniae TIGR4

51.544

96.339

0.497