Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   JQC68_RS10855 Genome accession   NZ_CP069308
Coordinates   2153521..2154192 (-) Length   223 a.a.
NCBI ID   WP_021119362.1    Uniprot ID   -
Organism   Glaesserella parasuis strain EHP1804     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2148521..2159192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC68_RS10835 (JQC68_10830) groL 2149703..2151346 (-) 1644 WP_203399089.1 chaperonin GroEL -
  JQC68_RS10840 (JQC68_10835) - 2151457..2151744 (-) 288 WP_005713186.1 co-chaperone GroES -
  JQC68_RS12535 (JQC68_10840) - 2151950..2152012 (-) 63 Protein_2102 RNA-guided endonuclease TnpB family protein -
  JQC68_RS10850 (JQC68_10845) qseC 2152134..2153534 (-) 1401 WP_203399090.1 quorum sensing histidine kinase QseC -
  JQC68_RS10855 (JQC68_10850) ciaR 2153521..2154192 (-) 672 WP_021119362.1 response regulator Regulator
  JQC68_RS10860 (JQC68_10855) - 2154253..2154618 (-) 366 WP_021114421.1 YgiW/YdeI family stress tolerance OB fold protein -
  JQC68_RS10865 (JQC68_10860) - 2154829..2155801 (+) 973 Protein_2106 transposase -
  JQC68_RS10870 (JQC68_10865) - 2155874..2157835 (-) 1962 WP_203399091.1 TonB-dependent receptor domain-containing protein -
  JQC68_RS10875 (JQC68_10870) rpmG 2157990..2158160 (-) 171 WP_005624479.1 50S ribosomal protein L33 -
  JQC68_RS10880 (JQC68_10875) rpmB 2158172..2158408 (-) 237 WP_006251446.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25484.17 Da        Isoelectric Point: 6.0355

>NTDB_id=464757 JQC68_RS10855 WP_021119362.1 2153521..2154192(-) (ciaR) [Glaesserella parasuis strain EHP1804]
MRILLVEDDPLIGEGLKLGLSKSGFSVDWFADGRSGLEALSSAPYDAVVLDLTLPKMDGLEVLQSWRRANQDVPVLILTA
RDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRYGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLEL
FMHNKERVLTRSFIEEKLYTWDDEVSSNALEVHIYNLRQKLGKQFIRTVHSVGYALGKNDEVA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=464757 JQC68_RS10855 WP_021119362.1 2153521..2154192(-) (ciaR) [Glaesserella parasuis strain EHP1804]
ATGCGTATTTTATTAGTTGAAGACGATCCGTTGATCGGTGAAGGGCTAAAACTTGGTTTGAGTAAATCTGGCTTTAGTGT
GGACTGGTTTGCCGATGGCAGATCTGGCTTAGAGGCGTTAAGTTCTGCTCCTTATGATGCCGTTGTTCTCGATCTCACCT
TGCCTAAAATGGACGGACTTGAGGTGTTACAAAGTTGGCGACGGGCAAATCAAGATGTGCCAGTGCTAATTTTGACTGCA
AGAGATACCCTTGATGAACGTATCACTGGGCTACAACGTGGTGCAGATGATTATCTTTGTAAACCTTTTGCTCTCGCAGA
AGTTGTAGCTCGTTTACAAGCTTTGATCCGCCGTCGTTATGGGCATACCAACCCCGTGATTGAACATAGTTTAGTTAAAT
TCGATCCAAACCAACGCAAAGTGTTTCTTCGGGAGCAAGAAGTCACCCTAACCACACGAGAGTACAATTTACTTGAGCTA
TTTATGCACAATAAAGAGCGTGTTCTCACCCGTTCTTTTATTGAAGAGAAACTCTATACTTGGGACGATGAAGTCAGTAG
CAACGCCCTTGAAGTCCATATCTACAATTTACGCCAAAAACTCGGAAAACAGTTTATTCGTACCGTACACAGTGTTGGCT
ATGCCTTAGGAAAAAACGATGAAGTTGCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.123

100

0.368
  ciaR Streptococcus pneumoniae D39

36.123

100

0.368
  ciaR Streptococcus pneumoniae R6

36.123

100

0.368
  ciaR Streptococcus pneumoniae TIGR4

36.123

100

0.368
  ciaR Streptococcus mutans UA159

35.526

100

0.363