Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | HQ393_RS15445 | Genome accession | NZ_CP058627 |
| Coordinates | 3251610..3252986 (+) | Length | 458 a.a. |
| NCBI ID | WP_179356299.1 | Uniprot ID | A0A7H9BM30 |
| Organism | Chitinibacter bivalviorum strain 2T18 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3210609..3276632 | 3251610..3252986 | within | 0 |
Gene organization within MGE regions
Location: 3210609..3276632
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQ393_RS15265 (HQ393_15265) | - | 3211283..3211921 (+) | 639 | WP_179356176.1 | HugZ family protein | - |
| HQ393_RS15270 (HQ393_15270) | rstA | 3211918..3212646 (+) | 729 | WP_179356179.1 | two-component system response regulator RstA | - |
| HQ393_RS15275 (HQ393_15275) | - | 3212831..3214132 (+) | 1302 | WP_179356182.1 | ATP-binding protein | - |
| HQ393_RS15280 (HQ393_15280) | - | 3214271..3215101 (+) | 831 | WP_179356184.1 | hypothetical protein | - |
| HQ393_RS15285 (HQ393_15285) | - | 3215191..3215994 (+) | 804 | WP_179356186.1 | serine protease | - |
| HQ393_RS15290 (HQ393_15290) | - | 3216043..3217317 (+) | 1275 | WP_179356188.1 | glutamate-5-semialdehyde dehydrogenase | - |
| HQ393_RS15295 (HQ393_15295) | - | 3217317..3217592 (+) | 276 | WP_179356190.1 | chorismate mutase | - |
| HQ393_RS15300 (HQ393_15300) | nadD | 3217605..3218231 (+) | 627 | WP_179356192.1 | nicotinate-nucleotide adenylyltransferase | - |
| HQ393_RS15305 (HQ393_15305) | rsfS | 3218242..3218628 (+) | 387 | WP_179356204.1 | ribosome silencing factor | - |
| HQ393_RS15310 (HQ393_15310) | cysD | 3218805..3219731 (+) | 927 | WP_179356207.1 | sulfate adenylyltransferase subunit CysD | - |
| HQ393_RS15315 (HQ393_15315) | cysN | 3220002..3221438 (+) | 1437 | WP_179356210.1 | sulfate adenylyltransferase subunit CysN | - |
| HQ393_RS15320 (HQ393_15320) | gspL | 3221830..3222891 (+) | 1062 | WP_179356213.1 | type II secretion system protein GspL | - |
| HQ393_RS15325 (HQ393_15325) | gspM | 3222888..3223370 (+) | 483 | WP_179356226.1 | type II secretion system protein GspM | - |
| HQ393_RS15330 (HQ393_15330) | gspN | 3223367..3224110 (+) | 744 | WP_179356241.1 | type II secretion system protein N | - |
| HQ393_RS15335 (HQ393_15335) | - | 3224190..3224534 (+) | 345 | WP_179356245.1 | zinc ribbon domain-containing protein YjdM | - |
| HQ393_RS15340 (HQ393_15340) | gspE | 3224708..3226183 (-) | 1476 | WP_179356247.1 | type II secretion system ATPase GspE | - |
| HQ393_RS15345 (HQ393_15345) | gspD | 3226185..3228305 (-) | 2121 | WP_179356250.1 | type II secretion system secretin GspD | - |
| HQ393_RS15350 (HQ393_15350) | - | 3228338..3229159 (-) | 822 | WP_179356253.1 | hypothetical protein | - |
| HQ393_RS15355 (HQ393_15355) | gspF | 3229398..3230600 (+) | 1203 | WP_179356255.1 | type II secretion system inner membrane protein GspF | - |
| HQ393_RS15360 (HQ393_15360) | gspG | 3230732..3231154 (+) | 423 | WP_179356257.1 | type II secretion system major pseudopilin GspG | - |
| HQ393_RS15365 (HQ393_15365) | gspH | 3231635..3232138 (+) | 504 | WP_179356260.1 | type II secretion system minor pseudopilin GspH | - |
| HQ393_RS15370 (HQ393_15370) | gspI | 3232135..3232503 (+) | 369 | WP_179356263.1 | type II secretion system minor pseudopilin GspI | - |
| HQ393_RS15375 (HQ393_15375) | gspJ | 3232874..3233641 (+) | 768 | WP_281361470.1 | type II secretion system minor pseudopilin GspJ | - |
| HQ393_RS15380 (HQ393_15380) | gspK | 3233638..3234537 (+) | 900 | WP_179356268.1 | type II secretion system minor pseudopilin GspK | - |
| HQ393_RS15385 (HQ393_15385) | - | 3234652..3235539 (+) | 888 | WP_179356271.1 | hypothetical protein | - |
| HQ393_RS15390 (HQ393_15390) | - | 3235605..3237854 (-) | 2250 | WP_179356274.1 | alkaline phosphatase | - |
| HQ393_RS15395 (HQ393_15395) | - | 3238308..3241058 (+) | 2751 | WP_246307909.1 | glycosyl hydrolase family 18 protein | - |
| HQ393_RS15400 (HQ393_15400) | - | 3241502..3242002 (+) | 501 | WP_179356276.1 | glycine cleavage system protein R | - |
| HQ393_RS15405 (HQ393_15405) | - | 3241999..3242961 (+) | 963 | WP_179356278.1 | ABC transporter substrate-binding protein | - |
| HQ393_RS15410 (HQ393_15410) | - | 3243015..3244178 (-) | 1164 | WP_179356281.1 | class I SAM-dependent methyltransferase | - |
| HQ393_RS15415 (HQ393_15415) | - | 3244315..3245166 (+) | 852 | WP_179356283.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| HQ393_RS15420 (HQ393_15420) | - | 3245258..3247279 (-) | 2022 | WP_179356286.1 | Ig-like domain-containing protein | - |
| HQ393_RS15425 (HQ393_15425) | ttcA | 3247598..3248563 (+) | 966 | WP_179356288.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| HQ393_RS15430 (HQ393_15430) | - | 3248563..3249351 (+) | 789 | WP_179356291.1 | fused MFS/spermidine synthase | - |
| HQ393_RS15435 (HQ393_15435) | - | 3249494..3249997 (+) | 504 | WP_179356294.1 | RNA pyrophosphohydrolase | - |
| HQ393_RS15440 (HQ393_15440) | - | 3250043..3251626 (+) | 1584 | WP_179356297.1 | nitrogen regulation protein NR(II) | - |
| HQ393_RS15445 (HQ393_15445) | pilR | 3251610..3252986 (+) | 1377 | WP_179356299.1 | sigma-54 dependent transcriptional regulator | Regulator |
| HQ393_RS15450 (HQ393_15450) | phnD | 3253205..3254176 (+) | 972 | WP_179356302.1 | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | - |
| HQ393_RS15455 (HQ393_15455) | - | 3254362..3255330 (-) | 969 | WP_179356305.1 | TIGR01212 family radical SAM protein | - |
| HQ393_RS17965 | - | 3255344..3255472 (+) | 129 | WP_281361471.1 | hypothetical protein | - |
| HQ393_RS15460 (HQ393_15460) | ampD | 3255504..3256088 (+) | 585 | WP_179358535.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| HQ393_RS15465 (HQ393_15465) | - | 3256199..3258091 (+) | 1893 | WP_179356308.1 | potassium transporter Kup | - |
| HQ393_RS15470 (HQ393_15470) | - | 3258268..3259644 (-) | 1377 | WP_179355150.1 | IS30 family transposase | - |
| HQ393_RS15475 (HQ393_15475) | - | 3259774..3260826 (+) | 1053 | WP_179356311.1 | porin | - |
| HQ393_RS15480 (HQ393_15480) | - | 3260866..3261495 (-) | 630 | WP_179356314.1 | pyrimidine 5'-nucleotidase | - |
| HQ393_RS15485 (HQ393_15485) | - | 3261563..3262003 (-) | 441 | WP_179356316.1 | CBS domain-containing protein | - |
| HQ393_RS15490 (HQ393_15490) | argB | 3262202..3263080 (-) | 879 | WP_179356319.1 | acetylglutamate kinase | - |
| HQ393_RS15495 (HQ393_15495) | - | 3263275..3263907 (+) | 633 | WP_179356322.1 | TetR/AcrR family transcriptional regulator | - |
| HQ393_RS15500 (HQ393_15500) | - | 3263912..3265027 (+) | 1116 | WP_179356325.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HQ393_RS15505 (HQ393_15505) | - | 3265020..3268112 (+) | 3093 | WP_179356328.1 | efflux RND transporter permease subunit | - |
| HQ393_RS15510 (HQ393_15510) | - | 3268193..3269536 (+) | 1344 | WP_179356329.1 | TolC family outer membrane protein | - |
| HQ393_RS15515 (HQ393_15515) | - | 3269614..3269928 (+) | 315 | WP_179356332.1 | H-NS family nucleoid-associated regulatory protein | - |
| HQ393_RS15520 (HQ393_15520) | - | 3270025..3272166 (+) | 2142 | WP_179356334.1 | UvrD-helicase domain-containing protein | - |
| HQ393_RS15525 (HQ393_15525) | - | 3272211..3273914 (+) | 1704 | WP_179356337.1 | response regulator | - |
| HQ393_RS15530 (HQ393_15530) | - | 3274082..3276190 (+) | 2109 | WP_179356340.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 458 a.a. Molecular weight: 50114.81 Da Isoelectric Point: 5.5911
>NTDB_id=464689 HQ393_RS15445 WP_179356299.1 3251610..3252986(+) (pilR) [Chitinibacter bivalviorum strain 2T18]
MAKKSKVLPRVLVVDDETDLADLLELTLLKMGLDVVKANGVALAKTLLDSQRFDLCLSDMRMPDGEGLELVQHIQARKLD
VPIAILTAYGSTNNAIAALKAGAFDYLAKPVALEQLRTLVKSALKLDTPESPASLPTGSNPLLGNSPALQYVLGLVDKLA
RNLAPVYITGESGSGKERAARLIHAKSARADKPFIAVNCGAIPENLMESEFFGYRKGAFTGANEDREGFFQAANGGTLFL
DEVADLPLVMQVKLLRAIQERKVRQVGGVAEVDVDVRIISATHQNLSKCVEAGKFRQDLYYRLNVIELKMPPLREMGEDV
LLIAQAVLQKIAARHGMRPPVLQAEALSALRTYDFPGNVRELENLLERALALCDGEQILAEDLHIQQTEADKAEAQAANL
GDTYPLQDYLDRVERAAIMAALDKTNFNRTQAAKLLGITFRSMRYRLDRLGITQGADE
MAKKSKVLPRVLVVDDETDLADLLELTLLKMGLDVVKANGVALAKTLLDSQRFDLCLSDMRMPDGEGLELVQHIQARKLD
VPIAILTAYGSTNNAIAALKAGAFDYLAKPVALEQLRTLVKSALKLDTPESPASLPTGSNPLLGNSPALQYVLGLVDKLA
RNLAPVYITGESGSGKERAARLIHAKSARADKPFIAVNCGAIPENLMESEFFGYRKGAFTGANEDREGFFQAANGGTLFL
DEVADLPLVMQVKLLRAIQERKVRQVGGVAEVDVDVRIISATHQNLSKCVEAGKFRQDLYYRLNVIELKMPPLREMGEDV
LLIAQAVLQKIAARHGMRPPVLQAEALSALRTYDFPGNVRELENLLERALALCDGEQILAEDLHIQQTEADKAEAQAANL
GDTYPLQDYLDRVERAAIMAALDKTNFNRTQAAKLLGITFRSMRYRLDRLGITQGADE
Nucleotide
Download Length: 1377 bp
>NTDB_id=464689 HQ393_RS15445 WP_179356299.1 3251610..3252986(+) (pilR) [Chitinibacter bivalviorum strain 2T18]
ATGGCCAAAAAATCTAAGGTATTACCGCGCGTTCTCGTTGTCGACGATGAAACGGATCTGGCTGATCTGCTTGAGCTGAC
GCTCTTGAAAATGGGGCTGGATGTCGTCAAAGCCAATGGCGTGGCGCTGGCTAAAACGCTGCTTGATAGCCAGCGCTTTG
ATCTGTGTCTGTCTGATATGCGTATGCCCGATGGCGAAGGGTTGGAATTGGTGCAGCACATTCAGGCGCGCAAGCTCGAT
GTGCCGATTGCCATTTTAACCGCCTATGGCAGTACCAATAACGCGATTGCCGCGCTGAAAGCGGGTGCATTTGATTATTT
GGCCAAACCCGTGGCGCTGGAGCAATTGCGTACTTTGGTGAAATCGGCGCTCAAGCTCGATACGCCCGAGTCGCCAGCCA
GTTTGCCGACTGGAAGTAATCCATTGCTCGGCAACTCACCCGCTTTGCAGTATGTGCTGGGTTTAGTCGATAAATTAGCG
CGTAATTTGGCGCCGGTGTATATCACGGGCGAATCAGGTTCGGGCAAAGAGCGTGCCGCGCGATTGATTCATGCCAAATC
CGCGCGGGCTGATAAGCCCTTTATTGCGGTTAATTGCGGCGCTATTCCTGAAAACCTGATGGAAAGCGAGTTTTTTGGTT
ATCGCAAAGGCGCATTTACGGGCGCCAATGAAGATCGCGAAGGTTTTTTTCAGGCGGCCAACGGTGGGACTTTATTTCTG
GATGAAGTCGCCGACTTGCCGCTAGTGATGCAGGTGAAATTACTACGCGCCATTCAGGAACGTAAAGTTCGTCAAGTCGG
CGGCGTAGCCGAAGTTGATGTGGATGTGCGTATTATCTCGGCGACGCATCAAAACCTCAGTAAATGCGTTGAGGCGGGCA
AGTTTCGGCAGGATTTGTATTACCGGCTCAATGTCATCGAACTCAAAATGCCGCCTCTGCGCGAAATGGGCGAGGATGTG
TTGCTGATTGCTCAGGCCGTGTTGCAAAAAATTGCGGCGCGTCATGGTATGCGCCCACCCGTGTTGCAGGCTGAAGCACT
CAGCGCGCTGCGCACGTATGATTTTCCGGGCAATGTCCGCGAATTAGAAAACTTGCTCGAACGCGCCTTGGCGCTTTGCG
ATGGCGAGCAAATTTTGGCGGAAGATCTGCATATTCAGCAGACCGAAGCGGATAAAGCCGAAGCGCAGGCGGCCAATTTG
GGCGATACCTACCCACTGCAAGATTATCTGGATCGGGTCGAGCGCGCTGCGATTATGGCGGCCTTGGATAAAACCAATTT
CAATCGCACGCAAGCGGCCAAGCTGTTGGGGATTACTTTCCGCAGTATGCGTTACCGGCTAGATCGTTTGGGGATCACGC
AAGGGGCGGATGAATAA
ATGGCCAAAAAATCTAAGGTATTACCGCGCGTTCTCGTTGTCGACGATGAAACGGATCTGGCTGATCTGCTTGAGCTGAC
GCTCTTGAAAATGGGGCTGGATGTCGTCAAAGCCAATGGCGTGGCGCTGGCTAAAACGCTGCTTGATAGCCAGCGCTTTG
ATCTGTGTCTGTCTGATATGCGTATGCCCGATGGCGAAGGGTTGGAATTGGTGCAGCACATTCAGGCGCGCAAGCTCGAT
GTGCCGATTGCCATTTTAACCGCCTATGGCAGTACCAATAACGCGATTGCCGCGCTGAAAGCGGGTGCATTTGATTATTT
GGCCAAACCCGTGGCGCTGGAGCAATTGCGTACTTTGGTGAAATCGGCGCTCAAGCTCGATACGCCCGAGTCGCCAGCCA
GTTTGCCGACTGGAAGTAATCCATTGCTCGGCAACTCACCCGCTTTGCAGTATGTGCTGGGTTTAGTCGATAAATTAGCG
CGTAATTTGGCGCCGGTGTATATCACGGGCGAATCAGGTTCGGGCAAAGAGCGTGCCGCGCGATTGATTCATGCCAAATC
CGCGCGGGCTGATAAGCCCTTTATTGCGGTTAATTGCGGCGCTATTCCTGAAAACCTGATGGAAAGCGAGTTTTTTGGTT
ATCGCAAAGGCGCATTTACGGGCGCCAATGAAGATCGCGAAGGTTTTTTTCAGGCGGCCAACGGTGGGACTTTATTTCTG
GATGAAGTCGCCGACTTGCCGCTAGTGATGCAGGTGAAATTACTACGCGCCATTCAGGAACGTAAAGTTCGTCAAGTCGG
CGGCGTAGCCGAAGTTGATGTGGATGTGCGTATTATCTCGGCGACGCATCAAAACCTCAGTAAATGCGTTGAGGCGGGCA
AGTTTCGGCAGGATTTGTATTACCGGCTCAATGTCATCGAACTCAAAATGCCGCCTCTGCGCGAAATGGGCGAGGATGTG
TTGCTGATTGCTCAGGCCGTGTTGCAAAAAATTGCGGCGCGTCATGGTATGCGCCCACCCGTGTTGCAGGCTGAAGCACT
CAGCGCGCTGCGCACGTATGATTTTCCGGGCAATGTCCGCGAATTAGAAAACTTGCTCGAACGCGCCTTGGCGCTTTGCG
ATGGCGAGCAAATTTTGGCGGAAGATCTGCATATTCAGCAGACCGAAGCGGATAAAGCCGAAGCGCAGGCGGCCAATTTG
GGCGATACCTACCCACTGCAAGATTATCTGGATCGGGTCGAGCGCGCTGCGATTATGGCGGCCTTGGATAAAACCAATTT
CAATCGCACGCAAGCGGCCAAGCTGTTGGGGATTACTTTCCGCAGTATGCGTTACCGGCTAGATCGTTTGGGGATCACGC
AAGGGGCGGATGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
57.788 |
96.725 |
0.559 |
| pilR | Acinetobacter baumannii strain A118 |
47.609 |
100 |
0.478 |
| luxO | Vibrio cholerae strain A1552 |
37.5 |
97.817 |
0.367 |