Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HZR12_RS13040 | Genome accession | NZ_CP058615 |
| Coordinates | 2559823..2560326 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain 110900 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2539260..2564389 | 2559823..2560326 | within | 0 |
Gene organization within MGE regions
Location: 2539260..2564389
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZR12_RS12880 (HZR12_12880) | - | 2539260..2539511 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| HZR12_RS12885 (HZR12_12885) | - | 2539811..2540074 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| HZR12_RS12890 (HZR12_12890) | - | 2540212..2540784 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| HZR12_RS12895 (HZR12_12895) | - | 2540965..2541333 (-) | 369 | WP_000849177.1 | YxeA family protein | - |
| HZR12_RS12900 (HZR12_12900) | selX | 2541702..2542313 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| HZR12_RS12905 (HZR12_12905) | - | 2542519..2543220 (+) | 702 | Protein_2493 | tyrosine-type recombinase/integrase | - |
| HZR12_RS12910 (HZR12_12910) | - | 2543259..2544197 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| HZR12_RS12915 (HZR12_12915) | - | 2544737..2545180 (-) | 444 | WP_000022885.1 | GNAT family N-acetyltransferase | - |
| HZR12_RS12920 (HZR12_12920) | - | 2545299..2545625 (-) | 327 | WP_000679756.1 | DUF1433 domain-containing protein | - |
| HZR12_RS12925 (HZR12_12925) | - | 2545718..2546929 (+) | 1212 | WP_009558370.1 | hypothetical protein | - |
| HZR12_RS12930 (HZR12_12930) | - | 2546931..2547320 (+) | 390 | WP_000362902.1 | hypothetical protein | - |
| HZR12_RS12935 (HZR12_12935) | - | 2547437..2547796 (+) | 360 | WP_000935290.1 | hypothetical protein | - |
| HZR12_RS12940 (HZR12_12940) | - | 2547871..2548440 (-) | 570 | WP_159343919.1 | terminase small subunit | - |
| HZR12_RS12945 (HZR12_12945) | - | 2548437..2548649 (-) | 213 | WP_078065371.1 | pathogenicity island family protein | - |
| HZR12_RS12950 (HZR12_12950) | - | 2548781..2549308 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| HZR12_RS12955 (HZR12_12955) | - | 2549359..2549577 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| HZR12_RS12960 (HZR12_12960) | - | 2549595..2550173 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| HZR12_RS12965 (HZR12_12965) | - | 2550185..2550526 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| HZR12_RS12970 (HZR12_12970) | - | 2550873..2551514 (-) | 642 | WP_048665662.1 | pathogenicity island protein | - |
| HZR12_RS12975 (HZR12_12975) | - | 2551516..2551788 (-) | 273 | WP_001149389.1 | hypothetical protein | - |
| HZR12_RS12980 (HZR12_12980) | - | 2551775..2552578 (-) | 804 | WP_000148373.1 | bifunctional DNA primase/polymerase | - |
| HZR12_RS12985 (HZR12_12985) | - | 2552754..2554370 (-) | 1617 | WP_048665658.1 | hypothetical protein | - |
| HZR12_RS12990 (HZR12_12990) | tscT | 2554445..2554744 (-) | 300 | WP_048665656.1 | type II toxin-antitoxin system toxin TscT | - |
| HZR12_RS12995 (HZR12_12995) | - | 2554745..2555128 (-) | 384 | WP_000403843.1 | hypothetical protein | - |
| HZR12_RS13000 (HZR12_13000) | - | 2555088..2555333 (-) | 246 | WP_001171847.1 | hypothetical protein | - |
| HZR12_RS13005 (HZR12_13005) | - | 2555318..2555473 (-) | 156 | WP_000784886.1 | hypothetical protein | - |
| HZR12_RS13010 (HZR12_13010) | - | 2555485..2555757 (-) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| HZR12_RS13015 (HZR12_13015) | - | 2555758..2555970 (-) | 213 | WP_048665654.1 | helix-turn-helix transcriptional regulator | - |
| HZR12_RS13020 (HZR12_13020) | - | 2556114..2556812 (+) | 699 | WP_048665652.1 | helix-turn-helix domain-containing protein | - |
| HZR12_RS13025 (HZR12_13025) | - | 2557265..2558479 (+) | 1215 | WP_048665650.1 | site-specific integrase | - |
| HZR12_RS13030 (HZR12_13030) | - | 2558515..2559141 (+) | 627 | WP_233231932.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| HZR12_RS13035 (HZR12_13035) | rpsR | 2559529..2559771 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| HZR12_RS13040 (HZR12_13040) | ssbA | 2559823..2560326 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| HZR12_RS13045 (HZR12_13045) | rpsF | 2560347..2560643 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| HZR12_RS13050 (HZR12_13050) | - | 2560887..2561078 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| HZR12_RS13055 (HZR12_13055) | ychF | 2561164..2562261 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| HZR12_RS13060 (HZR12_13060) | - | 2562273..2562476 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| HZR12_RS13065 (HZR12_13065) | - | 2562506..2563387 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| HZR12_RS13070 (HZR12_13070) | - | 2563544..2564389 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=464613 HZR12_RS13040 WP_000934799.1 2559823..2560326(-) (ssbA) [Staphylococcus aureus strain 110900]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=464613 HZR12_RS13040 WP_000934799.1 2559823..2560326(-) (ssbA) [Staphylococcus aureus strain 110900]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |