Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LLI11_RS12235 Genome accession   NZ_CP069223
Coordinates   2377537..2378130 (-) Length   197 a.a.
NCBI ID   WP_058221411.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain I.1.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2372537..2383130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLI11_RS12205 (LLI11_12125) - 2372744..2372908 (-) 165 WP_003131988.1 hypothetical protein -
  LLI11_RS12210 (LLI11_12130) - 2373013..2373630 (-) 618 WP_003131990.1 AAA family ATPase -
  LLI11_RS12215 (LLI11_12135) - 2373627..2374811 (-) 1185 WP_014570851.1 ABC transporter permease -
  LLI11_RS12220 (LLI11_12140) - 2374878..2375168 (-) 291 WP_003131992.1 hypothetical protein -
  LLI11_RS12225 (LLI11_12145) - 2375388..2376272 (-) 885 WP_003131993.1 XRE/MutR family transcriptional regulator -
  LLI11_RS12230 (LLI11_12150) ruvB 2376409..2377410 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LLI11_RS12235 (LLI11_12155) ruvA 2377537..2378130 (-) 594 WP_058221411.1 Holliday junction branch migration protein RuvA Machinery gene
  LLI11_RS12240 (LLI11_12160) hexB 2378243..2380213 (-) 1971 WP_014570854.1 DNA mismatch repair endonuclease MutL Machinery gene
  LLI11_RS12245 (LLI11_12165) - 2380342..2381037 (-) 696 WP_003131997.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21178.78 Da        Isoelectric Point: 5.8174

>NTDB_id=464541 LLI11_RS12235 WP_058221411.1 2377537..2378130(-) (ruvA) [Lactococcus lactis subsp. lactis strain I.1.1]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLIKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=464541 LLI11_RS12235 WP_058221411.1 2377537..2378130(-) (ruvA) [Lactococcus lactis subsp. lactis strain I.1.1]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCAGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAATTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

59.596

100

0.599
  ruvA Streptococcus pneumoniae R6

59.596

100

0.599
  ruvA Streptococcus pneumoniae D39

59.596

100

0.599
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462