Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HYE74_RS17395 Genome accession   NZ_CP058594
Coordinates   3120610..3120726 (+) Length   38 a.a.
NCBI ID   WP_218832528.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain ASRS217     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3118146..3132372 3120610..3120726 within 0


Gene organization within MGE regions


Location: 3118146..3132372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYE74_RS14805 - 3118146..3118652 (-) 507 WP_013860569.1 S4 domain-containing protein -
  HYE74_RS14810 - 3118837..3119373 (-) 537 WP_017550765.1 isochorismatase family cysteine hydrolase -
  HYE74_RS14815 - 3119388..3119591 (-) 204 WP_179234738.1 hypothetical protein -
  HYE74_RS14820 - 3119847..3120071 (+) 225 WP_013860568.1 hypothetical protein -
  HYE74_RS14825 - 3120200..3120619 (+) 420 WP_051039153.1 HTH domain-containing protein -
  HYE74_RS17395 pilR 3120610..3120726 (+) 117 WP_218832528.1 sigma 54-interacting transcriptional regulator Regulator
  HYE74_RS14830 - 3120914..3122224 (-) 1311 WP_013858128.1 transposase family protein -
  HYE74_RS14835 - 3122435..3123931 (+) 1497 WP_081092978.1 sigma 54-interacting transcriptional regulator -
  HYE74_RS14840 - 3123898..3124542 (+) 645 WP_218832493.1 PRD domain-containing protein -
  HYE74_RS14845 - 3124716..3125156 (+) 441 WP_014096937.1 PTS sugar transporter subunit IIA -
  HYE74_RS14850 - 3125168..3125659 (+) 492 WP_014096938.1 PTS sugar transporter subunit IIB -
  HYE74_RS14855 - 3125672..3126472 (+) 801 WP_014096939.1 PTS sugar transporter subunit IIC -
  HYE74_RS14860 - 3126469..3127290 (+) 822 WP_014096940.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  HYE74_RS14865 - 3127313..3127990 (+) 678 WP_014096941.1 hypothetical protein -
  HYE74_RS14870 - 3128175..3128627 (+) 453 WP_237682108.1 transposase family protein -
  HYE74_RS14875 - 3128703..3130016 (+) 1314 WP_017550355.1 IS1380-like element ISBco1 family transposase -
  HYE74_RS14880 - 3130424..3131446 (-) 1023 WP_061564844.1 hypothetical protein -
  HYE74_RS14885 - 3131873..3132372 (-) 500 Protein_2948 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 38 a.a.        Molecular weight: 4082.70 Da        Isoelectric Point: 9.0639

>NTDB_id=464493 HYE74_RS17395 WP_218832528.1 3120610..3120726(+) (pilR) [Heyndrickxia coagulans strain ASRS217]
MVLNCADYADNAELLSSVLFGYKKGAFTGATRKKTGQL

Nucleotide


Download         Length: 117 bp        

>NTDB_id=464493 HYE74_RS17395 WP_218832528.1 3120610..3120726(+) (pilR) [Heyndrickxia coagulans strain ASRS217]
ATTGTTTTAAACTGTGCAGACTACGCAGACAATGCAGAATTATTATCTTCTGTTCTGTTTGGTTATAAAAAGGGTGCTTT
TACGGGGGCAACCCGGAAAAAGACGGGCCAGCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(2-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

52.778

94.737

0.5
  pilR Pseudomonas aeruginosa PAK

50

89.474

0.447
  luxO Vibrio cholerae strain A1552

47.222

94.737

0.447