Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   SAA6008_RS07990 Genome accession   NC_017341
Coordinates   1625624..1626106 (-) Length   160 a.a.
NCBI ID   WP_014532870.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus str. JKD6008     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1620624..1631106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6008_RS07965 (SAA6008_01504) gcvPB 1620786..1622258 (-) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  SAA6008_RS07970 (SAA6008_01505) gcvPA 1622251..1623597 (-) 1347 WP_000019684.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAA6008_RS07975 (SAA6008_01506) gcvT 1623617..1624708 (-) 1092 WP_000093351.1 glycine cleavage system aminomethyltransferase GcvT -
  SAA6008_RS07980 (SAA6008_01507) - 1624867..1625391 (-) 525 WP_001015117.1 shikimate kinase -
  SAA6008_RS07985 (SAA6008_01508) - 1625381..1625527 (-) 147 WP_001789879.1 hypothetical protein -
  SAA6008_RS07990 (SAA6008_01509) comGF 1625624..1626106 (-) 483 WP_014532870.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAA6008_RS07995 (SAA6008_01510) comGE 1626039..1626338 (-) 300 WP_000844414.1 hypothetical protein Machinery gene
  SAA6008_RS08000 (SAA6008_01511) comGD 1626325..1626771 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAA6008_RS08005 (SAA6008_01512) comGC 1626749..1627060 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SAA6008_RS08010 (SAA6008_01513) comGB 1627074..1628144 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAA6008_RS08015 (SAA6008_01514) comGA 1628116..1629090 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  SAA6008_RS08020 (SAA6008_01515) - 1629142..1629765 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SAA6008_RS08025 (SAA6008_01516) - 1629762..1630091 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SAA6008_RS08030 (SAA6008_01517) - 1630091..1631077 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18672.22 Da        Isoelectric Point: 10.1190

>NTDB_id=46425 SAA6008_RS07990 WP_014532870.1 1625624..1626106(-) (comGF) [Staphylococcus aureus subsp. aureus str. JKD6008]
MTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMFISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDILDDFK
GVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQTKTIYV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=46425 SAA6008_RS07990 WP_014532870.1 1625624..1626106(-) (comGF) [Staphylococcus aureus subsp. aureus str. JKD6008]
GTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAATGTCAAAGCTTT
TTCGCTCATTGAAATGTTAGTAGCGATGATGTTTATAAGTATAACTTTACTAATTGTTCCAGACTTAATTAGACTTAGTA
AAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATTCTAGATGATTTTAAA
GGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAATGATCGAATACAAATT
AATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTACAGCATTTACTGCAA
ATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACTAAAACTATTTATGTA
TAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(61-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

98.75

100

0.988
  comGF Staphylococcus aureus N315

95

100

0.95

Multiple sequence alignment