Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HXS75_RS03560 Genome accession   NZ_CP058533
Coordinates   767898..770123 (+) Length   741 a.a.
NCBI ID   WP_233896839.1    Uniprot ID   -
Organism   Pseudomonas sivasensis strain W-6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 762898..775123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS75_RS03545 - 765158..765886 (+) 729 WP_179178803.1 response regulator transcription factor -
  HXS75_RS03550 - 765876..767243 (+) 1368 WP_179178804.1 sensor histidine kinase -
  HXS75_RS03555 - 767247..767762 (-) 516 WP_179178805.1 DUF2062 domain-containing protein -
  HXS75_RS03560 comA 767898..770123 (+) 2226 WP_233896839.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HXS75_RS03565 exbB 770234..770869 (+) 636 WP_032890033.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HXS75_RS03570 - 770866..771294 (+) 429 WP_095184456.1 biopolymer transporter ExbD -
  HXS75_RS03575 lpxK 771294..772304 (+) 1011 WP_095184457.1 tetraacyldisaccharide 4'-kinase -
  HXS75_RS03580 - 772329..772514 (+) 186 WP_003174668.1 Trm112 family protein -
  HXS75_RS03585 kdsB 772511..773275 (+) 765 WP_032889641.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HXS75_RS03590 - 773275..773739 (+) 465 WP_179178806.1 low molecular weight protein-tyrosine-phosphatase -
  HXS75_RS03595 murB 773736..774755 (+) 1020 WP_122680659.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80745.80 Da        Isoelectric Point: 10.3452

>NTDB_id=464154 HXS75_RS03560 WP_233896839.1 767898..770123(+) (comA) [Pseudomonas sivasensis strain W-6]
MKTGMFALALGLLALRFLPELPTTGWLIAMLVLVLMLLPFRTSPLAFFLLGLSWACISAQWALDDRLPPALDGQTRWLEG
RVIGLPQQTGTGVRFDLADSRSRNARLPKRIRVSWHGGPEVRSGERWRLAVTLKRPSGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLSPARHAWRDTVRQRLIAVDAQGREAGLAALVLGDGSGLAAEDWQVLQDTGTVHLLVISGQHIGLLAGLVYGL
VALLARYGFWPRMWPWLPWACGLAFASALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGFWWPLLLALNGVLILEPL
ASLQPGFWLSFTAVAVLILAFGGRLGPWGVWQAWTRPQWLIGIGLLPVLLVLGLPISVSAPLANLVAVPWISLVVLPLAL
LGTAMLPLPYLGEGLLWLAGGALDALFLGLAWLAGQVPAWIPADVPLGYWLISLMGAVLLLLPKGVPFRLLGWPMLLLAV
FPPREPVPHGRVEVVQLDVGQGQSLILRTRHHTLLYDAGLRSGTVDLGARVVLPSLKKLGVESLDMILLSHADADHAGGA
AAVARGVPIKRVVGGENEGLPAFLGAQPCISGEKWEWDGVSFELWQWSEAINGNPKSCVLQVQANGERLLLTGDIDRAAE
RAFLDSPLAVRTDWLQAPHHGSRSSSSWPFLRRLAPTSVLISRGRGNAFGHPHPQVVERYQTLGSQLYDSAEHGAVRLQL
GAFLPPIVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=464154 HXS75_RS03560 WP_233896839.1 767898..770123(+) (comA) [Pseudomonas sivasensis strain W-6]
ATGAAGACAGGGATGTTCGCGCTGGCGCTGGGCTTGCTTGCCCTGCGTTTCCTACCTGAGTTACCGACCACTGGATGGCT
GATAGCCATGCTGGTGCTGGTTTTGATGCTGCTGCCATTTCGTACGTCTCCCTTGGCGTTTTTCCTGCTGGGCTTGAGCT
GGGCGTGCATCAGTGCGCAATGGGCGCTGGATGATCGCTTGCCACCGGCGCTCGATGGCCAGACGCGATGGTTGGAGGGG
CGCGTCATTGGGTTGCCACAACAGACCGGCACCGGGGTGCGTTTCGATCTGGCCGACAGCCGGTCGCGTAACGCCCGGTT
GCCCAAGCGCATCCGTGTGTCCTGGCACGGTGGGCCCGAGGTACGCAGCGGGGAGCGCTGGCGCCTGGCAGTCACGCTTA
AGCGGCCGTCCGGGCTGCTCAATTTTCACGGTTTTGATCAAGAGGCATGGTTGCTGGCACAACGCATTGGCGCCACTGGC
TCGGTAAAAGACGGTGAGCGCCTGTCGCCGGCCCGCCATGCCTGGCGCGACACGGTCCGCCAACGGTTGATTGCCGTCGA
CGCTCAAGGTCGCGAGGCGGGCCTGGCAGCTTTGGTGCTGGGGGACGGTTCCGGGCTGGCAGCCGAGGATTGGCAGGTGT
TGCAGGACACCGGCACGGTGCACCTGCTGGTTATTTCCGGCCAGCATATCGGCCTGCTGGCGGGGCTGGTCTACGGGTTG
GTCGCGCTACTGGCACGCTACGGTTTCTGGCCTCGAATGTGGCCATGGCTGCCGTGGGCGTGTGGCTTGGCGTTTGCGTC
CGCGCTGGGTTATGGCCTGTTGGCGGGGTTCGGTGTGCCGGTCCAGCGGGCCTGCGTCATGGTGGGCCTGGTGCTGCTGT
GGCGTTTGCGCTTCCGTCATCTGGGGTTCTGGTGGCCGTTGTTGCTGGCGCTCAATGGTGTACTGATCCTTGAACCATTG
GCCAGCCTGCAACCGGGGTTTTGGCTTTCTTTTACGGCTGTTGCCGTATTGATCCTGGCTTTCGGCGGGCGCCTGGGGCC
GTGGGGTGTCTGGCAGGCCTGGACGCGTCCTCAATGGTTGATTGGCATTGGCCTGCTTCCTGTGTTGTTGGTGCTCGGGT
TGCCCATCAGCGTCAGTGCGCCGCTGGCCAATCTGGTGGCCGTGCCTTGGATCAGTCTTGTGGTGTTGCCGCTGGCGTTG
CTGGGGACCGCCATGCTGCCGCTGCCATATTTGGGGGAGGGCTTGCTGTGGCTGGCGGGTGGGGCGCTGGATGCGTTGTT
CCTGGGTCTGGCATGGCTCGCAGGGCAAGTGCCCGCGTGGATACCTGCCGATGTGCCCTTGGGTTACTGGCTGATCAGTC
TGATGGGCGCAGTGCTGTTGTTGCTGCCCAAAGGCGTGCCGTTTCGGCTGTTGGGCTGGCCGATGTTGCTGTTGGCAGTC
TTTCCACCGCGTGAGCCGGTGCCCCATGGGCGGGTGGAGGTGGTGCAGTTGGATGTGGGGCAGGGGCAGTCGTTGATTCT
GCGTACCCGGCATCACACGTTGCTTTACGACGCCGGCCTGCGGTCTGGCACAGTTGATCTGGGGGCTCGTGTGGTATTGC
CGTCGCTGAAAAAACTCGGCGTCGAGTCACTGGACATGATTTTGCTCAGTCACGCTGATGCCGATCATGCCGGTGGGGCT
GCGGCTGTTGCCCGAGGGGTGCCGATCAAGCGGGTCGTGGGCGGCGAAAACGAAGGGTTGCCAGCGTTTCTCGGAGCCCA
GCCATGTATCAGTGGCGAGAAGTGGGAATGGGACGGTGTGTCATTCGAGTTGTGGCAGTGGTCTGAGGCTATTAATGGCA
ATCCAAAGTCTTGCGTTCTGCAGGTCCAAGCCAATGGTGAACGGCTATTGCTCACCGGGGATATTGATCGCGCCGCCGAA
CGGGCATTTCTCGACTCACCACTGGCCGTGCGGACCGATTGGCTGCAAGCCCCTCACCATGGCAGCCGGAGTTCGTCATC
CTGGCCTTTTCTACGGCGGCTGGCACCCACGTCAGTGCTGATCTCCCGTGGGCGTGGCAACGCGTTCGGCCATCCTCATC
CACAGGTGGTTGAGCGCTACCAGACGCTGGGCAGCCAGTTATATGACAGTGCTGAGCATGGAGCGGTGCGCTTGCAATTG
GGGGCTTTCCTGCCACCCATTGTTGCGCGTAGTCAACGCCGTTTTTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-660)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.335

97.031

0.595
  comA Ralstonia pseudosolanacearum GMI1000

33.962

100

0.364