Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HXS75_RS03565 Genome accession   NZ_CP058533
Coordinates   770234..770869 (+) Length   211 a.a.
NCBI ID   WP_032890033.1    Uniprot ID   A0A031IUY7
Organism   Pseudomonas sivasensis strain W-6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 765234..775869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS75_RS03550 - 765876..767243 (+) 1368 WP_179178804.1 sensor histidine kinase -
  HXS75_RS03555 - 767247..767762 (-) 516 WP_179178805.1 DUF2062 domain-containing protein -
  HXS75_RS03560 comA 767898..770123 (+) 2226 WP_233896839.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HXS75_RS03565 exbB 770234..770869 (+) 636 WP_032890033.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HXS75_RS03570 - 770866..771294 (+) 429 WP_095184456.1 biopolymer transporter ExbD -
  HXS75_RS03575 lpxK 771294..772304 (+) 1011 WP_095184457.1 tetraacyldisaccharide 4'-kinase -
  HXS75_RS03580 - 772329..772514 (+) 186 WP_003174668.1 Trm112 family protein -
  HXS75_RS03585 kdsB 772511..773275 (+) 765 WP_032889641.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HXS75_RS03590 - 773275..773739 (+) 465 WP_179178806.1 low molecular weight protein-tyrosine-phosphatase -
  HXS75_RS03595 murB 773736..774755 (+) 1020 WP_122680659.1 UDP-N-acetylmuramate dehydrogenase -
  HXS75_RS03600 - 774832..775503 (-) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22767.94 Da        Isoelectric Point: 7.3613

>NTDB_id=464155 HXS75_RS03565 WP_032890033.1 770234..770869(+) (exbB) [Pseudomonas sivasensis strain W-6]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=464155 HXS75_RS03565 WP_032890033.1 770234..770869(+) (exbB) [Pseudomonas sivasensis strain W-6]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATTATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCTTGTGGACCCTGCGCGCCAGTCGAGTCACGCCCGAGCATCTATTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGGAAAAACTCAAGGCATTGCGCGCTGATTCGCCTTTGGGCGAAATCCTCGCCGCGGGCTTGGCTAAC
TCCAAGCATGGCCGCGAGATTATGAAAGAATGCATTGAAGAGGCCGCCGCCCGGGTTATTCATGAACTGGAGCGCTACAT
TAATGCTCTCGGCACCATCGCTGCCATGGCACCGTTGCTCGGTCTGCTGGGAACGGTATTGGGCATGATCGATATTTTCA
GCTCATTCATGGGGTCGGGCATGACCACCAACGCTGCCGTGCTCGCCGGGGGGATTTCCAAGGCCCTGATTACCACGGCA
GCAGGCCTGATGGTCGGTATTCCTGCGGTGTTCTTCCATCGTTTTCTGCAGCGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCCATCAAGTTGGTGGAAGTGGTGCAAGGCGACCGTGATGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031IUY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858