Detailed information NTG0463996

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HW090_RS07495
• Genome accession: NZ_CP058349
• Coordinates: 1689443..1691662 (-)
• Length: 739 a.a.
• NCBI ID: WP_179112922.1
• Uniprot ID: A0A7L5RV09
• Organism: Pseudomonas sp. ABC1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1684443..1696662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW090_RS07460 (HW090_07460)	murB	1684830..1685849 (-)	1020	WP_179112915.1	UDP-N-acetylmuramate dehydrogenase	-
HW090_RS07465 (HW090_07465)	-	1685846..1686310 (-)	465	WP_179112916.1	low molecular weight protein-tyrosine-phosphatase	-
HW090_RS07470 (HW090_07470)	kdsB	1686310..1687077 (-)	768	WP_179112917.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HW090_RS07475 (HW090_07475)	-	1687074..1687259 (-)	186	WP_179112918.1	Trm112 family protein	-
HW090_RS07480 (HW090_07480)	lpxK	1687240..1688280 (-)	1041	WP_179112919.1	tetraacyldisaccharide 4'-kinase	-
HW090_RS07485 (HW090_07485)	-	1688288..1688713 (-)	426	WP_179112920.1	biopolymer transporter ExbD	-
HW090_RS07490 (HW090_07490)	exbB	1688710..1689363 (-)	654	WP_179112921.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HW090_RS07495 (HW090_07495)	comA	1689443..1691662 (-)	2220	WP_179112922.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HW090_RS07500 (HW090_07500)	-	1691811..1693067 (-)	1257	WP_179112923.1	lipoprotein-releasing ABC transporter permease subunit	-
HW090_RS07505 (HW090_07505)	lolD	1693067..1693762 (-)	696	WP_179114857.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
HW090_RS07510 (HW090_07510)	-	1693770..1695017 (-)	1248	WP_179112924.1	lipoprotein-releasing ABC transporter permease subunit	-
HW090_RS07515 (HW090_07515)	-	1695101..1695688 (+)	588	WP_179112925.1	PilZ domain-containing protein	-
HW090_RS07520 (HW090_07520)	-	1695715..1696431 (+)	717	WP_179112926.1	glycerophosphodiester phosphodiesterase	-

Sequence

Protein

• Length: 739 a.a.
• Molecular weight: 79921.37 Da
• Isoelectric Point: 10.4650

>NTDB_id=463996 HW090_RS07495 WP_179112922.1 1689443..1691662(-) (comA) [Pseudomonas sp. ABC1]
MRTGIAALLAGLLTLRFLPVLPGALWLVGFGLLALGALCLPPFRLPALYALGLCWACASAQRALDDRLPDTHDGRTFWLE
GRVVGLPEHQQGVVRFILEDVQSRHDGLPGRLRLAWHGGPAVRAGERWRVAARLKRPHGMVNPQSFDYEAWLLARRIGAT
GTIKAGRLLDEPMAVSAFRDRLRNRLLQVDAAGRAGALAALVVGDGSGLSTADWRVLQDTGTVHLMVISGQHVSLLAGWL
YASVALLARWGLWPWRGPWWYGASALALAGALGYGWLAGFEVPVQRACAMVAAVLAWRLAFRHLGAWLPLALALLLVLLM
EPLASLQAGFWLSFASVALLVLAFAGRVGRWRWWQVLWRAQWIMALGLLPMMLALGLPVSLSGPLANMLAVPWVGAVVPV
ALLGSLALPVPWLGETLLWIAGWALALLMDVLAFLASWQDVWIAPALSLRSLGCVTLGCLLLVSPSGVPGRALGVPLLLP
LFFSGPEPPEPGQAEVWMFDVGQGSSMLVRTRHHALLYDAGARQGDFDLGERVVFPSMRHLGVSRLDALLLSHGDNDHAG
GAGAIVRSMPVAEVISGEPQRISAELQARPCGSGRRWSWDGVDFSLWQWARAGNGNQASCVLSVEAGGERILLTGDIDSA
AERAWLASSMAVPLDWLVLPHHGSRSSSSMALLAATSPSAVLISRSRHNAFGHPHPTVLARVRHIGAQVYDSAEQGAVRI
RLGRFEAAWVARSQRRFWR

Nucleotide

• Length: 2220 bp

>NTDB_id=463996 HW090_RS07495 WP_179112922.1 1689443..1691662(-) (comA) [Pseudomonas sp. ABC1]
ATGCGCACAGGGATCGCGGCGCTGCTGGCCGGACTGCTGACATTGCGTTTCCTTCCCGTGCTGCCTGGGGCTTTGTGGCT
GGTGGGGTTTGGGCTGCTGGCCCTGGGCGCCTTGTGTCTCCCTCCGTTCCGCCTGCCTGCGTTGTATGCCTTGGGGCTGT
GCTGGGCATGTGCCAGTGCCCAGCGGGCCTTGGACGATCGCTTGCCCGATACGCACGATGGTCGAACTTTCTGGCTCGAA
GGGCGGGTGGTCGGCCTGCCTGAGCACCAGCAGGGTGTGGTGCGTTTCATCCTTGAGGACGTGCAGTCGCGGCATGACGG
CCTGCCGGGGCGGCTGCGCCTGGCCTGGCATGGCGGCCCCGCTGTGCGGGCCGGCGAGCGTTGGCGGGTGGCGGCGCGCC
TGAAGCGCCCGCATGGCATGGTCAATCCGCAATCGTTCGACTACGAGGCCTGGTTGCTGGCCCGGCGCATTGGTGCCACC
GGCACGATCAAGGCAGGGCGGTTGCTGGATGAGCCGATGGCGGTCTCCGCTTTTCGCGACCGATTGCGCAATCGTCTGTT
GCAGGTGGATGCAGCGGGGAGGGCCGGTGCGCTGGCGGCGCTGGTCGTCGGTGATGGTTCGGGCCTGAGTACGGCGGACT
GGCGGGTCTTGCAGGACACCGGCACGGTGCACCTGATGGTGATCTCCGGCCAGCATGTGAGCCTGCTGGCCGGCTGGCTA
TATGCCTCGGTCGCCCTGTTGGCGCGCTGGGGGCTGTGGCCGTGGCGCGGGCCCTGGTGGTATGGCGCCAGTGCCCTGGC
TCTGGCGGGGGCGCTCGGTTACGGTTGGCTGGCCGGTTTCGAGGTGCCTGTGCAGCGGGCCTGTGCGATGGTTGCCGCCG
TACTCGCCTGGAGGCTCGCCTTTCGTCATCTGGGCGCCTGGTTGCCGTTGGCGCTGGCTTTGCTGCTGGTCCTGCTGATG
GAGCCCTTGGCCAGTCTGCAAGCCGGTTTCTGGCTGTCCTTCGCTTCGGTGGCGCTGTTGGTGCTGGCGTTCGCCGGTCG
GGTCGGGCGCTGGCGTTGGTGGCAAGTGCTCTGGCGGGCGCAATGGATCATGGCGCTGGGCCTGTTGCCGATGATGCTGG
CGCTGGGGTTGCCGGTCAGCCTCAGTGGGCCGCTGGCGAATATGCTGGCTGTGCCCTGGGTCGGAGCGGTGGTGCCAGTG
GCTTTGTTGGGAAGCCTGGCGCTACCCGTGCCCTGGCTCGGTGAAACGTTGCTCTGGATCGCAGGCTGGGCGCTGGCCTT
GCTGATGGATGTGCTGGCCTTCCTGGCGAGCTGGCAGGATGTCTGGATCGCGCCGGCCTTGAGCCTCCGGTCGCTCGGTT
GCGTGACCCTGGGTTGCCTGCTGCTGGTGTCGCCCAGCGGTGTGCCGGGCCGGGCCTTGGGCGTACCGCTGCTGTTGCCG
CTGTTTTTCAGCGGCCCGGAACCGCCAGAGCCGGGGCAGGCCGAAGTCTGGATGTTCGATGTGGGGCAGGGATCGTCCAT
GCTGGTGCGCACTCGGCATCATGCGCTGCTCTATGACGCAGGTGCTCGGCAGGGTGATTTCGATCTTGGCGAGCGGGTGG
TCTTTCCGTCGATGCGTCACTTGGGCGTCAGCCGCCTGGATGCCTTGCTGTTGAGCCATGGCGACAACGACCATGCGGGT
GGTGCCGGCGCGATCGTGCGGTCCATGCCGGTTGCCGAGGTGATCTCCGGGGAGCCGCAGCGTATTTCCGCCGAATTGCA
GGCGCGGCCTTGTGGCAGTGGTCGGCGCTGGAGTTGGGACGGTGTCGATTTTTCACTCTGGCAATGGGCGCGGGCAGGCA
ATGGCAACCAGGCCTCCTGTGTGCTGTCGGTGGAGGCCGGTGGCGAGCGCATCCTGCTGACCGGCGACATCGACAGCGCT
GCCGAGCGGGCGTGGCTGGCATCGTCGATGGCTGTCCCGCTGGACTGGCTGGTCTTGCCGCACCATGGCAGCCGCAGTTC
ATCCAGCATGGCCTTGCTGGCGGCCACTTCGCCTTCAGCGGTGCTGATTTCGCGCAGCCGACACAACGCGTTCGGGCACC
CGCATCCAACAGTGCTGGCCAGGGTTCGGCACATTGGGGCACAGGTGTATGACAGTGCGGAGCAGGGGGCTGTGCGCATT
CGCCTTGGCCGCTTCGAGGCCGCCTGGGTAGCGCGTTCGCAACGACGCTTCTGGCGATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (501-683)

• Competence protein (Competence) (201-463)

3D structure

• AlphaFold DB: A0A7L5RV09

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.241	95.399	0.632
comA	Ralstonia pseudosolanacearum GMI1000	35.271	100	0.369