Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HW090_RS07490 Genome accession   NZ_CP058349
Coordinates   1688710..1689363 (-) Length   217 a.a.
NCBI ID   WP_179112921.1    Uniprot ID   A0A7L5RUM4
Organism   Pseudomonas sp. ABC1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683710..1694363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW090_RS07460 (HW090_07460) murB 1684830..1685849 (-) 1020 WP_179112915.1 UDP-N-acetylmuramate dehydrogenase -
  HW090_RS07465 (HW090_07465) - 1685846..1686310 (-) 465 WP_179112916.1 low molecular weight protein-tyrosine-phosphatase -
  HW090_RS07470 (HW090_07470) kdsB 1686310..1687077 (-) 768 WP_179112917.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HW090_RS07475 (HW090_07475) - 1687074..1687259 (-) 186 WP_179112918.1 Trm112 family protein -
  HW090_RS07480 (HW090_07480) lpxK 1687240..1688280 (-) 1041 WP_179112919.1 tetraacyldisaccharide 4'-kinase -
  HW090_RS07485 (HW090_07485) - 1688288..1688713 (-) 426 WP_179112920.1 biopolymer transporter ExbD -
  HW090_RS07490 (HW090_07490) exbB 1688710..1689363 (-) 654 WP_179112921.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HW090_RS07495 (HW090_07495) comA 1689443..1691662 (-) 2220 WP_179112922.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HW090_RS07500 (HW090_07500) - 1691811..1693067 (-) 1257 WP_179112923.1 lipoprotein-releasing ABC transporter permease subunit -
  HW090_RS07505 (HW090_07505) lolD 1693067..1693762 (-) 696 WP_179114857.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23767.04 Da        Isoelectric Point: 10.1365

>NTDB_id=463995 HW090_RS07490 WP_179112921.1 1688710..1689363(-) (exbB) [Pseudomonas sp. ABC1]
MWELVKSGGWVMLPIILCSIAALGIIIERLWTLRVSRVTPPNLLGQVWKWIQDRQLNNEKLRELRADSPLGEILAAGLAN
SKRGRDIMKESIEEAAGRVIHELERYLNALGTIAGITPLLGLLGTVLAMIDIFGAFMGNSSANPALLAGGIAKALITTAS
GLMVAIPALFFHRFLTRRVDELVVGMEQEAIKLVEVVQGDRNVDLTVEAPRKRGRRA

Nucleotide


Download         Length: 654 bp        

>NTDB_id=463995 HW090_RS07490 WP_179112921.1 1688710..1689363(-) (exbB) [Pseudomonas sp. ABC1]
GTGTGGGAATTGGTTAAGTCGGGTGGCTGGGTGATGCTGCCGATCATCCTGTGTTCGATCGCTGCGCTTGGCATCATCAT
CGAGCGTCTATGGACCCTGCGTGTGAGCCGTGTGACGCCGCCGAACCTGCTCGGGCAGGTCTGGAAGTGGATACAGGACC
GGCAACTGAACAACGAAAAGCTCAGGGAGTTGCGTGCCGACTCGCCGCTGGGGGAAATCCTCGCAGCGGGGCTGGCCAAC
TCCAAGCGTGGCCGCGACATCATGAAGGAGAGCATCGAGGAGGCCGCCGGTCGGGTGATCCATGAGCTGGAGCGCTACCT
CAATGCCCTCGGCACCATTGCCGGCATCACGCCGCTGCTCGGGTTGCTGGGCACGGTGCTGGCGATGATCGACATCTTCG
GTGCCTTCATGGGTAACAGCTCGGCCAACCCCGCGCTGCTCGCCGGGGGCATCGCCAAGGCGCTGATCACCACGGCATCC
GGCCTGATGGTGGCGATTCCCGCACTGTTCTTCCATCGCTTCCTGACGCGTCGGGTCGACGAACTGGTGGTCGGCATGGA
GCAGGAGGCGATCAAGCTGGTCGAGGTGGTGCAAGGGGATCGCAACGTCGATCTGACGGTCGAGGCGCCACGCAAGCGGG
GGCGTCGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5RUM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.854

94.47

0.811