Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HWU11_RS01655 Genome accession   NZ_CP058285
Coordinates   341649..342449 (+) Length   266 a.a.
NCBI ID   WP_237008654.1    Uniprot ID   A0A438XZU1
Organism   Helicobacter pylori strain BT302     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 336649..347449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU11_RS01620 pseH 337149..337691 (+) 543 WP_237008650.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  HWU11_RS01625 - 337624..338562 (-) 939 WP_237008651.1 tetraacyldisaccharide 4'-kinase -
  HWU11_RS01630 - 338559..339341 (-) 783 WP_237008652.1 NAD+ synthase -
  HWU11_RS01640 ilvC 339590..340582 (+) 993 WP_237008653.1 ketol-acid reductoisomerase -
  HWU11_RS01645 minD 340606..341412 (+) 807 WP_024368957.1 septum site-determining protein MinD -
  HWU11_RS01650 minE 341409..341642 (+) 234 WP_000051425.1 cell division topological specificity factor MinE -
  HWU11_RS01655 dprA 341649..342449 (+) 801 WP_237008654.1 DNA-processing protein DprA Machinery gene
  HWU11_RS01660 dprB 342446..342850 (+) 405 WP_237008655.1 Holliday junction resolvase RuvX Machinery gene
  HWU11_RS01665 - 342978..343430 (+) 453 WP_237008656.1 tetratricopeptide repeat protein -
  HWU11_RS01670 - 343618..343956 (+) 339 WP_237008657.1 hypothetical protein -
  HWU11_RS01675 - 343940..344500 (+) 561 WP_237008658.1 hypothetical protein -
  HWU11_RS01680 - 344610..345491 (-) 882 WP_237008659.1 RluA family pseudouridine synthase -
  HWU11_RS01685 recJ 345491..347041 (-) 1551 WP_237008660.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29851.78 Da        Isoelectric Point: 8.5826

>NTDB_id=463451 HWU11_RS01655 WP_237008654.1 341649..342449(+) (dprA) [Helicobacter pylori strain BT302]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=463451 HWU11_RS01655 WP_237008654.1 341649..342449(+) (dprA) [Helicobacter pylori strain BT302]
ATGAAAAGCCATTTCCAATACAGCGCACTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCTGTTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCAAGATTAGCCCAAAAATACCAAAAGCCCTTATTTGTTTTGCCCCAACGCTTAAATGAGAGTGATGG
CACTAATGAGCTTTTAGAAAAAGGACAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCCAAAAACCCCAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAACGCATCAATCATCTCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A438XZU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.368

100

0.974
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414