Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HWU15_RS01765 Genome accession   NZ_CP058281
Coordinates   358093..358893 (+) Length   266 a.a.
NCBI ID   WP_237015727.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hk711     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 353093..363893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU15_RS01730 pseH 353596..354138 (+) 543 WP_237015722.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  HWU15_RS01735 - 354071..355009 (-) 939 WP_237015723.1 tetraacyldisaccharide 4'-kinase -
  HWU15_RS01740 - 355006..355788 (-) 783 WP_237015724.1 NAD+ synthase -
  HWU15_RS01750 ilvC 356034..357026 (+) 993 WP_237015725.1 ketol-acid reductoisomerase -
  HWU15_RS01755 minD 357045..357851 (+) 807 WP_237015726.1 septum site-determining protein MinD -
  HWU15_RS01760 minE 357848..358081 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HWU15_RS01765 dprA 358093..358893 (+) 801 WP_237015727.1 DNA-processing protein DprA Machinery gene
  HWU15_RS01770 dprB 358890..359294 (+) 405 WP_237015728.1 Holliday junction resolvase RuvX Machinery gene
  HWU15_RS01775 - 359423..360076 (+) 654 WP_237015729.1 tetratricopeptide repeat protein -
  HWU15_RS01780 - 360195..360533 (+) 339 WP_237015730.1 hypothetical protein -
  HWU15_RS01785 - 360517..361083 (+) 567 WP_237015731.1 hypothetical protein -
  HWU15_RS01790 - 361241..362122 (-) 882 WP_237015732.1 RluA family pseudouridine synthase -
  HWU15_RS01795 recJ 362122..363672 (-) 1551 WP_237015733.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29810.72 Da        Isoelectric Point: 9.1549

>NTDB_id=463428 HWU15_RS01765 WP_237015727.1 358093..358893(+) (dprA) [Helicobacter pylori strain Hk711]
MKSNFQYSALENIPKAFDILKDPPKKLYCVGDIKLLRAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHQAIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEKKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=463428 HWU15_RS01765 WP_237015727.1 358093..358893(+) (dprA) [Helicobacter pylori strain Hk711]
ATGAAAAGCAATTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATATAAAGCTTTTGAGAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCCACGAA
CAACCACCAAGCGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAATCGCCTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCTAGACTTGCCCAAAAGTATCAAAAACCCTTATTTGTTTTGCCTCAGCGCTTAAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ATCATTTAAAAGAAATGCCTGAAAAGAAAGACGAATTTTTAGAATATTGCGCCAAAAACCCGAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGACAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAACGCATCAATCATATCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

95.489

100

0.955
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.23

84.962

0.41