Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HWU15_RS01770 Genome accession   NZ_CP058281
Coordinates   358890..359294 (+) Length   134 a.a.
NCBI ID   WP_237015728.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hk711     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 353890..364294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU15_RS01735 - 354071..355009 (-) 939 WP_237015723.1 tetraacyldisaccharide 4'-kinase -
  HWU15_RS01740 - 355006..355788 (-) 783 WP_237015724.1 NAD+ synthase -
  HWU15_RS01750 ilvC 356034..357026 (+) 993 WP_237015725.1 ketol-acid reductoisomerase -
  HWU15_RS01755 minD 357045..357851 (+) 807 WP_237015726.1 septum site-determining protein MinD -
  HWU15_RS01760 minE 357848..358081 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HWU15_RS01765 dprA 358093..358893 (+) 801 WP_237015727.1 DNA-processing protein DprA Machinery gene
  HWU15_RS01770 dprB 358890..359294 (+) 405 WP_237015728.1 Holliday junction resolvase RuvX Machinery gene
  HWU15_RS01775 - 359423..360076 (+) 654 WP_237015729.1 tetratricopeptide repeat protein -
  HWU15_RS01780 - 360195..360533 (+) 339 WP_237015730.1 hypothetical protein -
  HWU15_RS01785 - 360517..361083 (+) 567 WP_237015731.1 hypothetical protein -
  HWU15_RS01790 - 361241..362122 (-) 882 WP_237015732.1 RluA family pseudouridine synthase -
  HWU15_RS01795 recJ 362122..363672 (-) 1551 WP_237015733.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15349.86 Da        Isoelectric Point: 9.4660

>NTDB_id=463429 HWU15_RS01770 WP_237015728.1 358890..359294(+) (dprB) [Helicobacter pylori strain Hk711]
MILACDVGLKRIGIAMLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPHESYADTNARIESFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=463429 HWU15_RS01770 WP_237015728.1 358890..359294(+) (dprB) [Helicobacter pylori strain Hk711]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCCATGAAAGCTATGCGGACACGAACGCGCGTATTGAATCTTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAACGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTATCAGCAGGTTTTAAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948