Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   CQZ96_RS15170 Genome accession   NZ_CP058272
Coordinates   3247468..3247998 (+) Length   176 a.a.
NCBI ID   WP_034615053.1    Uniprot ID   A0A8X8KDZ9
Organism   Acinetobacter sp. MYb10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3242468..3252998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS15155 (CQZ96_015185) comM 3245029..3246087 (+) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene
  CQZ96_RS15160 (CQZ96_015190) pilN 3246087..3246728 (+) 642 WP_105713831.1 PilN domain-containing protein Machinery gene
  CQZ96_RS15165 (CQZ96_015195) comO 3246725..3247471 (+) 747 WP_004725428.1 type 4a pilus biogenesis protein PilO Machinery gene
  CQZ96_RS15170 (CQZ96_015200) pilP 3247468..3247998 (+) 531 WP_034615053.1 pilus assembly protein PilP Machinery gene
  CQZ96_RS15175 (CQZ96_015205) pilQ 3248019..3250196 (+) 2178 WP_105713832.1 type IV pilus secretin PilQ family protein Machinery gene
  CQZ96_RS15180 (CQZ96_015210) aroK 3250233..3250775 (+) 543 WP_004725433.1 shikimate kinase AroK -
  CQZ96_RS15185 (CQZ96_015215) aroB 3250812..3251891 (+) 1080 WP_105713833.1 3-dehydroquinate synthase -
  CQZ96_RS15190 (CQZ96_015220) - 3251908..3252774 (+) 867 WP_105713834.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19479.58 Da        Isoelectric Point: 6.3532

>NTDB_id=463368 CQZ96_RS15170 WP_034615053.1 3247468..3247998(+) (pilP) [Acinetobacter sp. MYb10]
MKQLSKIVCGISFAMLLVGCDSRIDAVNQEMANIRNQQPLPIEPAPVFNPVPSFNYSAQQLRSPFLPNSLANELKIMSGK
RVYPNFSRQPQPLESYPLESLTLKGSMKGAVGQTVGLIQTPDGEIERVQLGNYMGMNQGRIIEITPTRIDLLEIVPDGRD
GYIERPRSLVLIGPID

Nucleotide


Download         Length: 531 bp        

>NTDB_id=463368 CQZ96_RS15170 WP_034615053.1 3247468..3247998(+) (pilP) [Acinetobacter sp. MYb10]
ATGAAACAGCTCAGTAAAATAGTTTGTGGAATCTCATTTGCAATGCTTTTAGTGGGGTGTGATTCTAGAATTGATGCCGT
TAATCAAGAGATGGCAAATATTCGAAATCAGCAACCACTGCCGATTGAACCTGCACCAGTATTCAATCCTGTACCGAGTT
TTAATTATTCAGCCCAACAATTACGCAGCCCATTTTTGCCAAATTCATTGGCAAATGAATTAAAAATCATGTCAGGCAAG
CGTGTCTACCCGAATTTTTCAAGACAGCCACAGCCACTTGAAAGCTATCCTTTAGAGTCATTAACACTGAAAGGGAGTAT
GAAAGGGGCCGTTGGGCAAACAGTGGGTTTGATTCAAACACCTGATGGTGAGATTGAGCGGGTACAACTTGGCAATTACA
TGGGCATGAATCAGGGGCGAATTATTGAGATTACGCCGACCCGTATTGATTTATTGGAAATTGTTCCAGATGGTCGAGAC
GGTTATATAGAAAGACCACGGAGTCTAGTTCTAATCGGTCCAATAGATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

72.674

97.727

0.71
  comL Acinetobacter baylyi ADP1

78.481

89.773

0.705