Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CQZ96_RS15160 Genome accession   NZ_CP058272
Coordinates   3246087..3246728 (+) Length   213 a.a.
NCBI ID   WP_105713831.1    Uniprot ID   -
Organism   Acinetobacter sp. MYb10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3241087..3251728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS15145 (CQZ96_015175) - 3241458..3242261 (+) 804 WP_105713829.1 putative RNA methyltransferase -
  CQZ96_RS15150 (CQZ96_015180) ponA 3242322..3244865 (-) 2544 WP_105713830.1 penicillin-binding protein PBP1a -
  CQZ96_RS15155 (CQZ96_015185) comM 3245029..3246087 (+) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene
  CQZ96_RS15160 (CQZ96_015190) pilN 3246087..3246728 (+) 642 WP_105713831.1 PilN domain-containing protein Machinery gene
  CQZ96_RS15165 (CQZ96_015195) comO 3246725..3247471 (+) 747 WP_004725428.1 type 4a pilus biogenesis protein PilO Machinery gene
  CQZ96_RS15170 (CQZ96_015200) pilP 3247468..3247998 (+) 531 WP_034615053.1 pilus assembly protein PilP Machinery gene
  CQZ96_RS15175 (CQZ96_015205) pilQ 3248019..3250196 (+) 2178 WP_105713832.1 type IV pilus secretin PilQ family protein Machinery gene
  CQZ96_RS15180 (CQZ96_015210) aroK 3250233..3250775 (+) 543 WP_004725433.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23865.37 Da        Isoelectric Point: 5.1584

>NTDB_id=463366 CQZ96_RS15160 WP_105713831.1 3246087..3246728(+) (pilN) [Acinetobacter sp. MYb10]
MAKINLLPWRDELREQKKKQFVAICVGVALIGLVIVLLAWFYFDHKLEDQEQANQLVTSTNQNLDTQLKTLDGLQERRNA
IIERMKLIQGLQGQRPVIVRLVDELVRIVPAQMYITKFSRVGDKFTIEGKAESPNTVAELLRGLEASEWYRNAFMNSFLA
ADENKNKEQTSVIPRVEESYGSFVVTVDIGEIAATADGDTTKAEQVPAAGGAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=463366 CQZ96_RS15160 WP_105713831.1 3246087..3246728(+) (pilN) [Acinetobacter sp. MYb10]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAGAAGAAGAAGCAATTTGTTGCAATATGTGTTGG
GGTTGCACTGATTGGCTTAGTTATAGTGTTATTGGCGTGGTTCTATTTTGATCATAAGTTAGAAGATCAGGAGCAAGCCA
ATCAATTGGTGACCAGTACCAATCAAAATTTAGATACGCAATTAAAAACTTTAGATGGTTTACAAGAACGTCGTAATGCC
ATTATTGAACGGATGAAACTGATTCAAGGCTTACAAGGTCAACGTCCTGTGATTGTTCGCCTCGTTGATGAATTGGTTCG
GATTGTCCCTGCACAAATGTACATCACAAAATTTAGTCGTGTGGGCGATAAATTTACCATTGAGGGGAAAGCTGAAAGTC
CAAACACAGTTGCTGAATTGTTGCGTGGATTAGAAGCTTCTGAATGGTATCGAAATGCGTTTATGAATTCATTCTTAGCC
GCAGATGAAAATAAAAATAAAGAACAGACTTCGGTGATTCCTCGTGTGGAAGAATCATATGGAAGTTTTGTTGTGACTGT
AGATATCGGTGAAATAGCAGCGACTGCAGATGGGGATACAACTAAAGCTGAACAAGTTCCAGCTGCTGGGGGTGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

71.362

100

0.714
  comN Acinetobacter baylyi ADP1

67.136

100

0.671