Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CQZ96_RS15175 Genome accession   NZ_CP058272
Coordinates   3248019..3250196 (+) Length   725 a.a.
NCBI ID   WP_105713832.1    Uniprot ID   -
Organism   Acinetobacter sp. MYb10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3243019..3255196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS15155 (CQZ96_015185) comM 3245029..3246087 (+) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene
  CQZ96_RS15160 (CQZ96_015190) pilN 3246087..3246728 (+) 642 WP_105713831.1 PilN domain-containing protein Machinery gene
  CQZ96_RS15165 (CQZ96_015195) comO 3246725..3247471 (+) 747 WP_004725428.1 type 4a pilus biogenesis protein PilO Machinery gene
  CQZ96_RS15170 (CQZ96_015200) pilP 3247468..3247998 (+) 531 WP_034615053.1 pilus assembly protein PilP Machinery gene
  CQZ96_RS15175 (CQZ96_015205) pilQ 3248019..3250196 (+) 2178 WP_105713832.1 type IV pilus secretin PilQ family protein Machinery gene
  CQZ96_RS15180 (CQZ96_015210) aroK 3250233..3250775 (+) 543 WP_004725433.1 shikimate kinase AroK -
  CQZ96_RS15185 (CQZ96_015215) aroB 3250812..3251891 (+) 1080 WP_105713833.1 3-dehydroquinate synthase -
  CQZ96_RS15190 (CQZ96_015220) - 3251908..3252774 (+) 867 WP_105713834.1 hypothetical protein -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 78817.41 Da        Isoelectric Point: 7.2148

>NTDB_id=463369 CQZ96_RS15175 WP_105713832.1 3248019..3250196(+) (pilQ) [Acinetobacter sp. MYb10]
MKKSLKNIFNGDGKFMNSQLRQFTMAAVSIAIMQVAAAQTTMTNIVPMKIPGQGTEIRVMFNGLPPQPQAYQLDNPSRLI
LDFDQAKQTINQPSIAVASEEASTVDITADDQRSRLTVNLKNSGSFTTRVEGNTFILKINNANQAAALPTYASSASTLNK
QNQGIADIGFQRGNAGEGQVIVNLSGANTPVDVQQQGSKVVIRTLGNKIPAHLIRRLNVNDFATPVSSVDAYNDGSNGVI
TIQSAGSYEYMAFQAENKLTVSLKRPVENKVNRPSSSQSYTGKKISLDFQDIEVRRVLQLLADFTSINMVAADSVQGNIT
LRLKDVPWDQALDIILKTKNLDKRRNGSVIWIAPVTELIKAEEDEAKAIAQSVKLAPIQTEYIQLSYAKVAEVLKLLQDS
RNPKGAQANNTTNTDSLALESLLSLRGSAVADTRTNTLIINDTANNIDKIRKMIDLVDISVKQVMVEARIVRATTDFTKE
MGVKWGILSQGINKNNDLLVGGSDKTLWDLRTPDDDGKYTITRPDNLNVDLGVTTAGASKIAFGLISMSDFMLDLELSAL
QSDGYGEVISTPKVMTADKQKAKVSSGQEIPYQTTSTAGGAATATTEFKDALLSLDVTPSITPDGKVQMQLNITSDSRGG
VAPNGEIILNKNEINTNVLVDNGETVVLGGIFEQETTSSQTKVPFLGDIPYLGRLFRKDVKSDNKRELLIFVTPRIVNDS
RTRNH

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=463369 CQZ96_RS15175 WP_105713832.1 3248019..3250196(+) (pilQ) [Acinetobacter sp. MYb10]
ATGAAAAAGAGTTTGAAAAATATCTTTAACGGGGATGGTAAGTTTATGAATAGTCAACTTCGTCAATTTACTATGGCGGC
AGTGTCAATTGCGATTATGCAGGTTGCAGCAGCACAAACAACCATGACCAATATTGTACCGATGAAAATACCGGGGCAAG
GTACAGAAATTCGGGTGATGTTTAATGGCTTACCGCCACAGCCTCAAGCCTATCAATTGGATAATCCATCTCGACTGATT
TTGGATTTTGATCAGGCGAAGCAAACGATCAATCAGCCGTCTATTGCTGTGGCAAGTGAAGAAGCGTCGACGGTGGATAT
TACGGCCGATGATCAACGTTCACGCTTAACGGTAAATTTAAAAAATAGTGGTTCTTTTACAACACGTGTTGAAGGGAATA
CCTTTATTTTAAAGATTAACAATGCCAATCAAGCTGCTGCTTTACCGACTTATGCCTCATCTGCATCTACGCTGAATAAG
CAAAATCAAGGCATCGCAGATATCGGTTTTCAGCGTGGCAATGCTGGCGAAGGCCAGGTTATTGTAAATCTGTCAGGTGC
AAATACACCTGTAGATGTACAGCAACAGGGCAGTAAAGTTGTTATTCGAACCTTAGGAAATAAAATTCCTGCACATTTAA
TTCGTCGTTTAAATGTCAATGATTTTGCAACCCCAGTTTCTTCTGTGGATGCTTATAATGATGGTTCAAATGGCGTGATT
ACCATTCAATCTGCTGGTAGCTATGAATATATGGCCTTCCAAGCGGAAAATAAACTGACCGTGAGTTTAAAACGTCCTGT
AGAAAATAAAGTAAATCGCCCAAGTTCAAGTCAGTCTTATACCGGTAAGAAAATCTCGCTGGATTTTCAAGATATCGAAG
TACGCCGTGTGCTACAGCTGCTTGCTGATTTTACCAGTATTAATATGGTGGCTGCAGATTCAGTTCAAGGTAATATTACT
TTACGTTTAAAAGATGTACCTTGGGATCAGGCCTTAGATATTATTTTAAAAACCAAGAATTTAGACAAGCGTCGTAATGG
TAGTGTGATTTGGATTGCACCTGTCACCGAGCTGATTAAAGCTGAAGAAGATGAAGCAAAAGCGATTGCACAAAGTGTCA
AATTAGCGCCAATTCAAACTGAATATATTCAACTCAGTTATGCTAAAGTTGCAGAAGTTCTTAAATTATTACAGGACTCT
AGAAATCCTAAAGGTGCGCAGGCGAATAATACCACGAATACAGATTCTTTAGCTTTAGAAAGTCTACTCAGCTTAAGAGG
GAGTGCGGTTGCAGATACACGAACAAATACATTAATTATTAATGATACTGCAAATAATATTGATAAAATTCGTAAAATGA
TTGATTTGGTAGATATTTCGGTAAAACAAGTCATGGTTGAAGCACGTATTGTTCGAGCAACAACGGATTTTACCAAAGAA
ATGGGTGTGAAATGGGGGATTTTATCCCAAGGGATTAACAAGAATAATGACTTGCTGGTTGGAGGAAGCGATAAGACATT
ATGGGATTTACGAACTCCAGATGATGATGGGAAATATACTATTACTCGGCCCGATAATTTAAATGTCGATCTTGGTGTCA
CCACGGCGGGCGCAAGCAAAATTGCATTTGGTTTAATTAGTATGTCTGATTTTATGTTGGATCTAGAATTGTCAGCTTTA
CAATCTGATGGTTATGGTGAAGTGATTTCAACACCAAAAGTGATGACGGCGGATAAGCAAAAAGCCAAAGTTTCATCAGG
TCAAGAAATTCCTTATCAAACAACATCAACAGCAGGAGGCGCTGCAACTGCAACCACGGAATTTAAAGATGCATTATTGA
GTTTGGATGTTACACCAAGTATTACCCCAGATGGTAAGGTGCAAATGCAATTGAATATTACCAGTGATTCACGTGGTGGG
GTGGCACCGAATGGTGAAATCATTTTGAATAAAAATGAGATCAATACCAATGTCTTGGTAGATAATGGTGAGACAGTTGT
TTTGGGGGGGATTTTTGAACAAGAAACTACATCAAGTCAAACCAAGGTGCCTTTCCTGGGAGATATCCCTTATCTAGGGC
GATTATTTAGAAAAGATGTAAAGTCTGATAATAAACGAGAATTACTAATCTTTGTGACACCAAGAATTGTTAATGACAGT
CGTACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(559-717)

Secretin and TonB N terminus short domain (STN)

(312-354)

AMIN domain (AMIN)

(55-137)

Bacterial type II/III secretion system short domain (Secretin_N)

(381-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii strain A118

72.94

100

0.732
  pilQ Acinetobacter baumannii D1279779

72.94

100

0.732
  comQ Acinetobacter baylyi ADP1

70.07

98.621

0.691
  pilQ Pseudomonas aeruginosa PAK

38.369

100

0.396